Browse Element(s) Details


OsAffx.4877.1.S1_x_at

Description tigr:9634.m01941
TID=OsAffx.4877.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2001011/11RNA recognition motif, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g19970OsAffx.15507.2.S1_at11/116+11449220..11449805expressed protein
LOC_Os06g19970OsAffx.15507.2.S1_x_at11/116+11449220..11449805expressed protein
LOC_Os06g19980OsAffx.15508.1.S1_at11/116+11452024..11460167Myb-like DNA-binding domain containing protein, expressed
LOC_Os06g19980Os.18071.1.S1_s_at11/116+11452024..11460167Myb-like DNA-binding domain containing protein, expressed
LOC_Os06g19980Os.18071.1.S1_at11/116+11452024..11460167Myb-like DNA-binding domain containing protein, expressed
LOC_Os06g19990Os.12376.1.S1_at11/116+11460524..11463788expressed protein
LOC_Os06g19990Os.3053.1.A1_at1/116+11460524..11463788expressed protein
LOC_Os06g20000OsAffx.15509.1.S1_at11/116+11468461..11468730hypothetical protein
LOC_Os06g20010OsAffx.4877.1.S1_at11/116+11473474..11473743RNA recognition motif, putative
LOC_Os06g20010OsAffx.4877.1.S1_x_at11/116+11473474..11473743RNA recognition motif, putative
LOC_Os06g20020NANA6+11475505..11476803Zinc finger, C2H2 type family protein, expressed
LOC_Os06g20030Os.49962.1.S1_at11/116+11482109..11485822group II intron splicing factor CRS1, putative, expressed
LOC_Os06g20030Os.39087.1.S1_at1/116+11482109..11485822group II intron splicing factor CRS1, putative, expressed
LOC_Os06g20040Os.50300.1.S1_at11/116+11485981..11493270Eukaryotic aspartyl protease family protein, expressed
LOC_Os06g20040Os.50300.1.S1_s_at11/116+11485981..11493270Eukaryotic aspartyl protease family protein, expressed
LOC_Os06g20040Os.17403.1.S1_a_at1/116+11485981..11493270Eukaryotic aspartyl protease family protein, expressed
LOC_Os06g20050NANA6+11497993..11502824NB-ARC domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0009738biological_processabscisic acid mediated signaling
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4877.1.S1_x_at--983--5831Chr06:11473689..11473713 (25 bp)
GACCTCACGAGCATGAAGCTCTTCG
LOC_Os06g20010
OsAffx.4877.1.S1_x_at--137--9671Chr06:11473685..11473709 (25 bp)
TCACGAGCATGAAGCTCTTCGTCCA
LOC_Os06g20010
OsAffx.4877.1.S1_x_at--580--4091Chr06:11473636..11473660 (25 bp)
CGACGACCTCCACTTTGCGTTCTCC
LOC_Os06g20010
OsAffx.4877.1.S1_x_at--263--1591Chr06:11473601..11473625 (25 bp)
AGCTCGAGGACTGCTGTGTCATCTC
LOC_Os06g20010
OsAffx.4877.1.S1_x_at--832--8111Chr06:11473594..11473618 (25 bp)
GGACTGCTGTGTCATCTCCAACAAG
LOC_Os06g20010
OsAffx.4877.1.S1_x_at--629--451Chr06:11473581..11473605 (25 bp)
ATCTCCAACAAGCAATCTGGTAGAT
LOC_Os06g20010
OsAffx.4877.1.S1_x_at--292--8591Chr06:11473564..11473588 (25 bp)
TGGTAGATCTAAGGGCTATGGCTTC
LOC_Os06g20010
OsAffx.4877.1.S1_x_at--636--9251Chr06:11473538..11473562 (25 bp)
TCCTCTTCTACCCATATGCCGAAAA
LOC_Os06g20010
OsAffx.4877.1.S1_x_at--1003--3751Chr06:11473536..11473560 (25 bp)
CTCTTCTACCCATATGCCGAAAAGG
LOC_Os06g20010
OsAffx.4877.1.S1_x_at--131--9571Chr06:11473535..11473559 (25 bp)
TCTTCTACCCATATGCCGAAAAGGG
LOC_Os06g20010
OsAffx.4877.1.S1_x_at--221--6011Chr06:11473504..11473528 (25 bp)
GAGAGGCGTAGGGAGCGTTGTCAAC
LOC_Os06g20010
Target Sequence 
GACCTCACGAGCATGAAGCTCTTCGTCCACGGCCTCGGCTGGGGCGCCGAAGCCGACGACCTCCACTTTGCGTTCTCCCT
CTTCGGTGAGCTCGAGGACTGCTGTGTCATCTCCAACAAGCAATCTGGTAGATCTAAGGGCTATGGCTTCGTCCTCTTCT
ACCCATATGCCGAAAAGGGGAAGGAGAGAGGCGTAGGGAGCGTTGTCAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4877.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis