Browse Element(s) Details


OsAffx.4904.1.S1_at

Description tigr:9634.m02242
TID=OsAffx.4904.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2280010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g22770OsAffx.22722.1.S1_at3/116+13256508..13261277retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g22770OsAffx.22722.1.S1_x_at2/116+13256508..13261277retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g22770OsAffx.1646.1.S1_x_at1/116+13256508..13261277retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g22780NANA6+13261752..13262633retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g22790OsAffx.10496.1.S1_at3/116+13262975..13265834retrotransposon protein, putative, unclassified
LOC_Os06g22790OsAffx.20628.2.S1_at1/116+13262975..13265834retrotransposon protein, putative, unclassified
LOC_Os06g22790OsAffx.20628.1.S1_at1/116+13262975..13265834retrotransposon protein, putative, unclassified
LOC_Os06g22790OsAffx.22171.1.S1_at1/116+13262975..13265834retrotransposon protein, putative, unclassified
LOC_Os06g22800OsAffx.4904.1.S1_at10/116+13277775..13278303hypothetical protein
LOC_Os06g22800Os.37711.3.S1_x_at1/116+13277775..13278303hypothetical protein
LOC_Os06g22810Os.18972.1.S1_at11/116+13296088..13300240protein kinase, putative, expressed
LOC_Os06g22820Os.11911.1.S1_at11/116+13301551..13305575Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4904.1.S1_at--1009--4232Chr11:14236169..14236454 (25 bp)
CCGGCGGTGGTTGAGGTCCTACATT
NONE
OsAffx.4904.1.S1_at--641--4672Chr06:13277985..13278259 (25 bp)
GCGGTGGTTGAGGTCCTACATTTGC
LOC_Os06g22800
OsAffx.4904.1.S1_at--1001--77111Chr12:14223708..14224014 (25 bp)
GGTGGTTGAGGTCCTACATTTGCAC
NONE
OsAffx.4904.1.S1_at--204--1151Chr06:13277920..13277944 (25 bp)
AGTCCGCCGGTGATCGAGGTTGTTT
LOC_Os06g22800
OsAffx.4904.1.S1_at--896--4251Chr06:13277914..13277938 (25 bp)
CCGGTGATCGAGGTTGTTTGCTATC
LOC_Os06g22800
OsAffx.4904.1.S1_at--941--7751Chr06:13277912..13277936 (25 bp)
GGTGATCGAGGTTGTTTGCTATCTA
LOC_Os06g22800
OsAffx.4904.1.S1_at--97--7411Chr06:13277911..13277935 (25 bp)
GTGATCGAGGTTGTTTGCTATCTAT
LOC_Os06g22800
OsAffx.4904.1.S1_at--798--62314Chr12:14224156..14224229 (25 bp)
GATGGCTGCTACTGCGCAACGTCGA
NONE
OsAffx.4904.1.S1_at--170--8711Chr10:5557937..5557961 (25 bp)
ATGGCTGCTACTGCGCAACGTCGAG
NONE
OsAffx.4904.1.S1_at--610--4775Chr10:5557940..5557961 (22 bp)
GCTGCTACTGCGCAACGTCGAGTTC
NONE
OsAffx.4904.1.S1_at--629--3837Chr10:5557941..5557961 (21 bp)
CTGCTACTGCGCAACGTCGAGTTCA
NONE
Target Sequence 
CCGGCGGTGGTTGAGGTCCTACATTTGCACATCATGCTCCATGTGGCTGACCACAGAGGATAGGGTGGAGTCCGCCGGTG
ATCGAGGTTGTTTGCTATCTATTTTTCTTTTGCTCGTCATCTCTATTGACATGAACGAGAATGTTTTTGCATTTTTTTCG
TGCTTGCTAGATGATGGATGGCTGCTACTGCGCAACGTCGAGTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4904.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis