Browse Element(s) Details

OsAffx.4957.1.S1_at

Description

tigr:9634.m02758
TID=OsAffx.4957.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g28830	9/11	expressed protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g28810	Os.46012.2.S1_x_at	6/11	6	+	16402199..16407003	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g28810	Os.46012.3.S1_x_at	4/11	6	+	16402199..16407003	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g28810	Os.46012.3.S1_at	4/11	6	+	16402199..16407003	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g28810	Os.27088.1.A1_x_at	3/11	6	+	16402199..16407003	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g28820	Os.50200.1.S1_at	3/11	6	+	16409135..16423537	squalene/oxidosqualene cyclases family protein
LOC_Os06g28820	Os.50821.1.S1_at	1/11	6	+	16409135..16423537	squalene/oxidosqualene cyclases family protein
LOC_Os06g28820	Os.27061.2.A1_x_at	1/11	6	+	16409135..16423537	squalene/oxidosqualene cyclases family protein
LOC_Os06g28830	Os.51559.1.A1_at	11/11	6	+	16428492..16431428	expressed protein
LOC_Os06g28830	OsAffx.4957.1.S1_s_at	11/11	6	+	16428492..16431428	expressed protein
LOC_Os06g28830	OsAffx.4957.1.S1_at	9/11	6	+	16428492..16431428	expressed protein
LOC_Os06g28840	Os.21854.2.S1_x_at	11/11	6	+	16439867..16443416	expressed protein
LOC_Os06g28840	Os.21854.2.S1_at	11/11	6	+	16439867..16443416	expressed protein
LOC_Os06g28850	OsAffx.15648.1.S1_at	1/11	6	+	16446516..16449850	Transposable element protein, putative, Retrotrans_gag
LOC_Os06g28860	OsAffx.5142.1.S1_x_at	1/11	6	+	16450828..16452587	hypothetical protein
LOC_Os06g28860	Os.53842.2.S1_x_at	1/11	6	+	16450828..16452587	hypothetical protein

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Gene Ontology Classification

GO id	Type	Name
GO:0019745	biological_process	pentacyclic triterpenoid biosynthesis
GO:0016871	molecular_function	cycloartenol synthase activity
GO:0042299	molecular_function	lupeol synthase activity
GO:0042300	molecular_function	beta-amyrin synthase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.4957.1.S1_at--685--375	1	NONE	CTCATGCGTATGCAGGCCGGATCCA	NONE
OsAffx.4957.1.S1_at--344--353	1	NONE	CATGCGTATGCAGGCCGGATCCACA	NONE
OsAffx.4957.1.S1_at--287--1013	1	Chr06:16429945..16430212 (25 bp)	TATGCAGGCCGGATCCACACTGCCG	LOC_Os06g28830
OsAffx.4957.1.S1_at--144--719	1	Chr06:16429836..16429860 (25 bp)	GTCGGCCTACCGCTCGAGCTCATTG	LOC_Os06g28830
OsAffx.4957.1.S1_at--1138--995	1	Chr06:16429829..16429853 (25 bp)	TACCGCTCGAGCTCATTGCCGGATA	LOC_Os06g28830
OsAffx.4957.1.S1_at--151--379	1	Chr06:16429824..16429848 (25 bp)	CTCGAGCTCATTGCCGGATATGCAC	LOC_Os06g28830
OsAffx.4957.1.S1_at--461--709	1	Chr06:16429779..16429803 (25 bp)	GTCACTGTCGCCGTAGCCAAACCCA	LOC_Os06g28830
OsAffx.4957.1.S1_at--313--149	1	Chr06:16429727..16429751 (25 bp)	AGCACACCAAGCATGGCAACTGCCT	LOC_Os06g28830
OsAffx.4957.1.S1_at--659--271	1	Chr06:16429719..16429743 (25 bp)	AAGCATGGCAACTGCCTCCATTGGT	LOC_Os06g28830
OsAffx.4957.1.S1_at--239--153	1	Chr06:16429718..16429742 (25 bp)	AGCATGGCAACTGCCTCCATTGGTG	LOC_Os06g28830
OsAffx.4957.1.S1_at--904--923	1	Chr06:16429703..16429727 (25 bp)	TCCATTGGTGCCCACCATCGGGAGG	LOC_Os06g28830

Target Sequence

CTCATGCGTATGCAGGCCGGATCCACACTGCCGCCGCCGCCGGAGCCCATGCCTACCGCCACCGTGCCGCTCGCCGCCAT
CGTGCCCCACGCCCACTACCTCCCGCTCAAGACCGCTGTCGGCCTACCGCTCGAGCTCATTGCCGGATATGCACGGGGGA
GGGCCAAGGGGGCCGTCACTGTCGCCGTAGCCAAACCCACACCCGCTGCCACCGCCGTCGCCGTCGAGCACACCAAGCAT
GGCAACTGCCTCCATTGGTGCCCACCATCGGGAGG

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis