Browse Element(s) Details


OsAffx.4957.1.S1_s_at

Description tigr:9634.m02758
TID=OsAffx.4957.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2883011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g28810Os.46012.2.S1_x_at6/116+16402199..16407003retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g28810Os.46012.3.S1_x_at4/116+16402199..16407003retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g28810Os.46012.3.S1_at4/116+16402199..16407003retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g28810Os.27088.1.A1_x_at3/116+16402199..16407003retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g28820Os.50200.1.S1_at3/116+16409135..16423537squalene/oxidosqualene cyclases family protein
LOC_Os06g28820Os.50821.1.S1_at1/116+16409135..16423537squalene/oxidosqualene cyclases family protein
LOC_Os06g28820Os.27061.2.A1_x_at1/116+16409135..16423537squalene/oxidosqualene cyclases family protein
LOC_Os06g28830Os.51559.1.A1_at11/116+16428492..16431428expressed protein
LOC_Os06g28830OsAffx.4957.1.S1_s_at11/116+16428492..16431428expressed protein
LOC_Os06g28830OsAffx.4957.1.S1_at9/116+16428492..16431428expressed protein
LOC_Os06g28840Os.21854.2.S1_x_at11/116+16439867..16443416expressed protein
LOC_Os06g28840Os.21854.2.S1_at11/116+16439867..16443416expressed protein
LOC_Os06g28850OsAffx.15648.1.S1_at1/116+16446516..16449850Transposable element protein, putative, Retrotrans_gag
LOC_Os06g28860OsAffx.5142.1.S1_x_at1/116+16450828..16452587hypothetical protein
LOC_Os06g28860Os.53842.2.S1_x_at1/116+16450828..16452587hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0019745biological_processpentacyclic triterpenoid biosynthesis
GO:0016871molecular_functioncycloartenol synthase activity
GO:0042299molecular_functionlupeol synthase activity
GO:0042300molecular_functionbeta-amyrin synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4957.1.S1_s_at--1053--3971Chr06:16431237..16431261 (25 bp)
CGGGCTGCGGTCATGCAACGGCTTT
LOC_Os06g28830
OsAffx.4957.1.S1_s_at--412--7071Chr06:16431228..16431252 (25 bp)
GTCATGCAACGGCTTTCTTGGTAGA
LOC_Os06g28830
OsAffx.4957.1.S1_s_at--488--5151Chr06:16431223..16431247 (25 bp)
GCAACGGCTTTCTTGGTAGAGCTGT
LOC_Os06g28830
OsAffx.4957.1.S1_s_at--910--1931Chr06:16431220..16431244 (25 bp)
ACGGCTTTCTTGGTAGAGCTGTGTG
LOC_Os06g28830
OsAffx.4957.1.S1_s_at--674--1371Chr06:16431206..16431230 (25 bp)
AGAGCTGTGTGGGAATTCGACCCAA
LOC_Os06g28830
OsAffx.4957.1.S1_s_at--503--8431Chr06:16431199..16431223 (25 bp)
TGTGGGAATTCGACCCAAACGCCGG
LOC_Os06g28830
OsAffx.4957.1.S1_s_at--804--991Chr06:16431146..16431170 (25 bp)
AGGATGCGCCGTGAGTTTACTCTGC
LOC_Os06g28830
OsAffx.4957.1.S1_s_at--539--8891Chr06:16431135..16431159 (25 bp)
TGAGTTTACTCTGCGCCGCTTCGAG
LOC_Os06g28830
OsAffx.4957.1.S1_s_at--254--8011Chr06:16431109..16431133 (25 bp)
GGAGGGAAGCCCAGGATCTGCTCAT
LOC_Os06g28830
OsAffx.4957.1.S1_s_at--656--2671Chr06:16431103..16431127 (25 bp)
AAGCCCAGGATCTGCTCATGCGTAT
LOC_Os06g28830
OsAffx.4957.1.S1_s_at--327--4351Chr06:16431099..16431123 (25 bp)
CCAGGATCTGCTCATGCGTATGCAG
LOC_Os06g28830
Target Sequence 
CGGGCTGCGGTCATGCAACGGCTTTCTTGGTAGAGCTGTGTGGGAATTCGACCCAAACGCCGGCACGCCGGAGGAGCGCG
CCGAGGTAGAGAGGATGCGCCGTGAGTTTACTCTGCGCCGCTTCGAGAGGAGGGAAGCCCAGGATCTGCTCATGCGTATG
CAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4957.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis