Browse Element(s) Details

Description

tigr:9634.m02931
TID=OsAffx.4972.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g30470	8/11	expressed protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g30430	OsAffx.27882.1.S1_at	11/11	6	+	17583539..17585353	NB-ARC domain containing protein
LOC_Os06g30440	Os.13846.2.S1_at	11/11	6	+	17585902..17589660	GH3 auxin-responsive promoter family protein, expressed
LOC_Os06g30440	Os.13846.2.S1_x_at	10/11	6	+	17585902..17589660	GH3 auxin-responsive promoter family protein, expressed
LOC_Os06g30440	Os.13846.1.S1_at	9/11	6	+	17585902..17589660	GH3 auxin-responsive promoter family protein, expressed
LOC_Os06g30450	NA	NA	6	+	17592384..17592983	hypothetical protein
LOC_Os06g30460	Os.22279.1.S1_at	11/11	6	+	17596802..17608674	2-oxo acid dehydrogenases acyltransferase family protein, expressed
LOC_Os06g30460	Os.22279.3.S1_x_at	9/11	6	+	17596802..17608674	2-oxo acid dehydrogenases acyltransferase family protein, expressed
LOC_Os06g30470	OsAffx.4972.1.S1_at	8/11	6	+	17608800..17611799	expressed protein
LOC_Os06g30480	Os.27351.1.S1_x_at	8/11	6	+	17616360..17617969	expressed protein
LOC_Os06g30480	OsAffx.24778.1.S1_s_at	1/11	6	+	17616360..17617969	expressed protein
LOC_Os06g30490	OsAffx.27883.1.S1_at	11/11	6	+	17625945..17626533	hypothetical protein
LOC_Os06g30500	OsAffx.27884.1.S1_at	11/11	6	+	17629607..17631315	Cytochrome P450 family protein, expressed

Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.4972.1.S1_at--365--335	3	Chr06:17609154..17609174 (21 bp)	CACCCAGGAGCAGGATTGAGAACGA	LOC_Os06g30470
OsAffx.4972.1.S1_at--136--435	1	Chr06:17609154..17609177 (24 bp)	CCAGGAGCAGGATTGAGAACGACAA	LOC_Os06g30470
OsAffx.4972.1.S1_at--740--543	1	Chr06:17609169..17609193 (25 bp)	GAACGACAAGAAAAGTTTCGATTCG	LOC_Os06g30470
OsAffx.4972.1.S1_at--310--283	2	Chr06:17609181..17609205 (25 bp)	AAGTTTCGATTCGTTTGTTCTCGAG	LOC_Os06g30470
OsAffx.4972.1.S1_at--1007--1061	2	Chr06:17609185..17609206 (22 bp)	TTCGATTCGTTTGTTCTCGAGGCAT	LOC_Os06g30470
OsAffx.4972.1.S1_at--805--9	1	NONE	ATTCGTTTGTTCTCGAGGCATCTGA	NONE
OsAffx.4972.1.S1_at--1080--685	1	NONE	GTTTGTTCTCGAGGCATCTGATTTC	NONE
OsAffx.4972.1.S1_at--1126--1079	1	NONE	TTGTTCTCGAGGCATCTGATTTCTC	NONE
OsAffx.4972.1.S1_at--164--621	1	Chr06:17611538..17611561 (24 bp)	GAGGCATCTGATTTCTCGGTGATCA	LOC_Os06g30470
OsAffx.4972.1.S1_at--1044--495	1	Chr06:17611540..17611564 (25 bp)	GCATCTGATTTCTCGGTGATCAAGG	LOC_Os06g30470
OsAffx.4972.1.S1_at--467--883	1	Chr06:17611545..17611569 (25 bp)	TGATTTCTCGGTGATCAAGGATGGA	LOC_Os06g30470

Target Sequence

CACCCAGGAGCAGGATTGAGAACGACAAGAAAAGTTTCGATTCGTTTGTTCTCGAGGCATCTGATTTCTCGGTGATCAAG
GATGGA

Expression Profiles

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project: