Browse Element(s) Details


Os.13846.2.S1_x_at

Description gb:AK107353.1
DB_XREF= gi:32992562
TID=Os.13846.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.13846 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-126-H08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-126-H08, full insert sequence.
FL= gb:AK107353.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3044010/11GH3 auxin-responsive promoter family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g30390OsAffx.27881.1.S1_at10/116+17554779..17561527expressed protein
LOC_Os06g30390Os.7438.1.S1_at10/116+17554779..17561527expressed protein
LOC_Os06g30400NANA6+17564598..17565011hypothetical protein
LOC_Os06g30409Os.55753.1.S1_x_at1/116+17566345..17566931NA
LOC_Os06g30420OsAffx.15677.1.S1_at11/116+17576000..17577928pentatricopeptide, putative, expressed
LOC_Os06g30430OsAffx.27882.1.S1_at11/116+17583539..17585353NB-ARC domain containing protein
LOC_Os06g30440Os.13846.2.S1_at11/116+17585902..17589660GH3 auxin-responsive promoter family protein, expressed
LOC_Os06g30440Os.13846.2.S1_x_at10/116+17585902..17589660GH3 auxin-responsive promoter family protein, expressed
LOC_Os06g30440Os.13846.1.S1_at9/116+17585902..17589660GH3 auxin-responsive promoter family protein, expressed
LOC_Os06g30450NANA6+17592384..17592983hypothetical protein
LOC_Os06g30460Os.22279.1.S1_at11/116+17596802..176086742-oxo acid dehydrogenases acyltransferase family protein, expressed
LOC_Os06g30460Os.22279.3.S1_x_at9/116+17596802..176086742-oxo acid dehydrogenases acyltransferase family protein, expressed
LOC_Os06g30470OsAffx.4972.1.S1_at8/116+17608800..17611799expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009733biological_processresponse to auxin stimulus
GO:0009734biological_processauxin mediated signaling pathway
GO:0009826biological_processunidimensional cell growth
GO:0010252biological_processauxin homeostasis
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13846.2.S1_x_at--485--451Chr06:17588448..17588472 (25 bp)
ATCTAACCCAGCTTTAGCCGATGAG
LOC_Os06g30440
Os.13846.2.S1_x_at--320--871Chr06:17588373..17588397 (25 bp)
ATGGCCTAGGGCACGGTATATCCGG
LOC_Os06g30440
Os.13846.2.S1_x_at--1079--531Chr06:17588354..17588378 (25 bp)
ATCCGGACCATTGTGACTGGTTCAA
LOC_Os06g30440
Os.13846.2.S1_x_at--240--10851Chr06:17588282..17588306 (25 bp)
TTGGTCTCACCAATCTATGCATCTA
LOC_Os06g30440
Os.13846.2.S1_x_at--551--4971Chr06:17588264..17588288 (25 bp)
GCATCTACAGAATGCGCTGCCGGGA
LOC_Os06g30440
Os.13846.2.S1_x_at--145--9851Chr06:17588239..17588263 (25 bp)
TAAATCTGAGGCCACTTGATCCACC
LOC_Os06g30440
Os.13846.2.S1_x_at--351--791NONE
ATGTGTCATATGCATTGCCTCCAAA
NONE
Os.13846.2.S1_x_at--26--3331Chr06:17588040..17588064 (25 bp)
CACTACCTTTGCAGGCAAGCTGTTG
LOC_Os06g30440
Os.13846.2.S1_x_at--893--1591Chr06:17588023..17588047 (25 bp)
AGCTGTTGGGCTACTTTTTATCCCT
LOC_Os06g30440
Os.13846.2.S1_x_at--44--5671Chr06:17587989..17588013 (25 bp)
GACATGGCTAGGTTTATCTTATATC
LOC_Os06g30440
Os.13846.2.S1_x_at--796--10751Chr06:17587958..17587982 (25 bp)
TTGAAAGCTCTCATCGATTTCTTGT
LOC_Os06g30440
Target Sequence 
ATCTAACCCAGCTTTAGCCGATGAGATTGCATCCGAGTGTGCGAGGAAACCTTGGGATGGGATAGTCAGGAGGCTATGGC
CTAGGGCACGGTATATCCGGACCATTGTGACTGGTTCAATGTCACAGTACATTCCAATTCTTGAGGTTTATGGTGGCGGG
CTACCATTGGTCTCACCAATCTATGCATCTACAGAATGCGCTGCCGGGATAAATCTGAGGCCACTTGATCCACCATCCCA
TGTGTCATATGCATTGCCTCCAAACATTGCTTACTTTGAGTTCTTGGAGGTCATGGATGAAAATGGTGAAAAGGTACAAG
GAACTACCAGGCTTGATGACAATTTGGGTGAGGTAAAAGTTGTTGACCTTGTGGATGTCAAAGTTGGTTGATGCTATGAG
TTGATTGTCACTACCTTTGCAGGCAAGCTGTTGGGCTACTTTTTATCCCTTTTTTTTCAGACATGGCTAGGTTTATCTTA
TATCTGATCATTGAAAGCTCTCATCGATTTCTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13846.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis