Browse Element(s) Details


Os.7438.1.S1_at

Description gb:AU101086
DB_XREF= gi:9865336
DB_XREF=AU101086
CLONE=E0769
TID=Os.7438.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.7438 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3039010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g30350Os.47130.4.A1_x_at1/116+17533154..17533486retrotransposon protein, putative, unclassified
LOC_Os06g30350Os.37083.2.S1_at1/116+17533154..17533486retrotransposon protein, putative, unclassified
LOC_Os06g30370Os.16218.1.S1_at11/116+17538926..17541483MOTHER of FT and TF1 protein, putative, expressed
LOC_Os06g30380Os.20068.1.S1_at11/116+17549122..17552472expressed protein
LOC_Os06g30390OsAffx.27881.1.S1_at10/116+17554779..17561527expressed protein
LOC_Os06g30390Os.7438.1.S1_at10/116+17554779..17561527expressed protein
LOC_Os06g30400NANA6+17564598..17565011hypothetical protein
LOC_Os06g30409Os.55753.1.S1_x_at1/116+17566345..17566931NA
LOC_Os06g30420OsAffx.15677.1.S1_at11/116+17576000..17577928pentatricopeptide, putative, expressed
LOC_Os06g30430OsAffx.27882.1.S1_at11/116+17583539..17585353NB-ARC domain containing protein
LOC_Os06g30440Os.13846.2.S1_at11/116+17585902..17589660GH3 auxin-responsive promoter family protein, expressed
LOC_Os06g30440Os.13846.2.S1_x_at10/116+17585902..17589660GH3 auxin-responsive promoter family protein, expressed
LOC_Os06g30440Os.13846.1.S1_at9/116+17585902..17589660GH3 auxin-responsive promoter family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009941cellular_componentchloroplast envelope
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7438.1.S1_at--636--9891NONE
TACTATGCTAAGGTCTTGGGTGGAA
NONE
Os.7438.1.S1_at--1065--2911Chr06:17561134..17561158 (25 bp)
AAGGAGATGGCGAGTCCCAGCTGAC
LOC_Os06g30390
Os.7438.1.S1_at--378--6111Chr06:17561145..17561169 (25 bp)
GAGTCCCAGCTGACTAAGCCTGCAA
LOC_Os06g30390
Os.7438.1.S1_at--526--9791Chr06:17561159..17561183 (25 bp)
TAAGCCTGCAAACTAACCTGCCCTT
LOC_Os06g30390
Os.7438.1.S1_at--347--9171Chr06:17561177..17561201 (25 bp)
TGCCCTTGCATTGTTGTATGTCAGC
LOC_Os06g30390
Os.7438.1.S1_at--1130--8751Chr06:17561191..17561215 (25 bp)
TGTATGTCAGCTTTTCTCTTAACAT
LOC_Os06g30390
Os.7438.1.S1_at--233--7151Chr06:17561268..17561292 (25 bp)
GTCCGTAGTAGGGTAAAGTCAGTGC
LOC_Os06g30390
Os.7438.1.S1_at--201--2851Chr06:17561283..17561307 (25 bp)
AAGTCAGTGCATGTTGCCTTGGGCC
LOC_Os06g30390
Os.7438.1.S1_at--324--4431Chr06:17561298..17561322 (25 bp)
GCCTTGGGCCCAGAATCATTATTTT
LOC_Os06g30390
Os.7438.1.S1_at--386--10211Chr06:17561317..17561341 (25 bp)
TATTTTCATTTTGTGCTTCCTCGTG
LOC_Os06g30390
Os.7438.1.S1_at--1137--10651Chr06:17561344..17561368 (25 bp)
TTCCTGCCTTTTAGTGTCACCGGTA
LOC_Os06g30390
Target Sequence 
TACTATGCTAAGGTCTTGGGTGGAAGAAGAAGCAGCACGTGTACATGAACGAGCTGAAGTACTTGAGAGGGCTGTAAGGA
GATGGCGAGTCCCAGCTGACTAAGCCTGCAAACTAACCTGCCCTTGCATTGTTGTATGTCAGCTTTTCTCTTAACATTTT
TATGTTCTGTGGTATCAGGGCTTCGGCTGTCAGTTATAAACAATTCCTTGTCCGTAGTAGGGTAAAGTCAGTGCATGTTG
CCTTGGGCCCAGAATCATTATTTTCATTTTGTGCTTCCTCGTGACTTCCTGCCTTTTAGTGTCACCGGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7438.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis