Browse Element(s) Details


OsAffx.15677.1.S1_at

Description tigr:9634.m02925
TID=OsAffx.15677.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to AL161552 membrane-associated salt-inducible-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3042011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g30380Os.20068.1.S1_at11/116+17549122..17552472expressed protein
LOC_Os06g30390OsAffx.27881.1.S1_at10/116+17554779..17561527expressed protein
LOC_Os06g30390Os.7438.1.S1_at10/116+17554779..17561527expressed protein
LOC_Os06g30400NANA6+17564598..17565011hypothetical protein
LOC_Os06g30409Os.55753.1.S1_x_at1/116+17566345..17566931NA
LOC_Os06g30420OsAffx.15677.1.S1_at11/116+17576000..17577928pentatricopeptide, putative, expressed
LOC_Os06g30430OsAffx.27882.1.S1_at11/116+17583539..17585353NB-ARC domain containing protein
LOC_Os06g30440Os.13846.2.S1_at11/116+17585902..17589660GH3 auxin-responsive promoter family protein, expressed
LOC_Os06g30440Os.13846.2.S1_x_at10/116+17585902..17589660GH3 auxin-responsive promoter family protein, expressed
LOC_Os06g30440Os.13846.1.S1_at9/116+17585902..17589660GH3 auxin-responsive promoter family protein, expressed
LOC_Os06g30450NANA6+17592384..17592983hypothetical protein
LOC_Os06g30460Os.22279.1.S1_at11/116+17596802..176086742-oxo acid dehydrogenases acyltransferase family protein, expressed
LOC_Os06g30460Os.22279.3.S1_x_at9/116+17596802..176086742-oxo acid dehydrogenases acyltransferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15677.1.S1_at--469--7711Chr06:17576563..17576587 (25 bp)
GGGTGCGTGCCAAATGCTGTTAGTT
LOC_Os06g30420
OsAffx.15677.1.S1_at--823--6451Chr06:17576528..17576552 (25 bp)
GATCAATGGACTCTGCAATGTAGGG
LOC_Os06g30420
OsAffx.15677.1.S1_at--303--5391Chr06:17576477..17576501 (25 bp)
GAAGCACATGCTTGACCGTGGCTGT
LOC_Os06g30420
OsAffx.15677.1.S1_at--507--4731Chr06:17576457..17576481 (25 bp)
GCTGTGCACCTGACACAATTGCTTA
LOC_Os06g30420
OsAffx.15677.1.S1_at--638--3211Chr06:17576420..17576444 (25 bp)
CAAGGGCTTATGTGTTTCCGGAATG
LOC_Os06g30420
OsAffx.15677.1.S1_at--479--811Chr06:17576398..17576422 (25 bp)
ATGGTGGATGGTGGTCTTCGATTAT
LOC_Os06g30420
OsAffx.15677.1.S1_at--793--4711Chr06:17576363..17576387 (25 bp)
GCTGGCAAGTGGTCATGCTGATCCA
LOC_Os06g30420
OsAffx.15677.1.S1_at--700--351Chr06:17576325..17576349 (25 bp)
ATAATGTCCTGCTGGATGGGCTGCT
LOC_Os06g30420
OsAffx.15677.1.S1_at--946--9311Chr06:17576286..17576310 (25 bp)
TCCCACGGGCAATGGACTTGCTGAA
LOC_Os06g30420
OsAffx.15677.1.S1_at--302--5631Chr06:17576233..17576257 (25 bp)
GACACGGTGACATGCAATATTTTCT
LOC_Os06g30420
OsAffx.15677.1.S1_at--919--1171Chr06:17576088..17576112 (25 bp)
AGTACATTGTGCCAGAGGCTCCCAT
LOC_Os06g30420
Target Sequence 
GGGTGCGTGCCAAATGCTGTTAGTTACAGCATATTGATCAATGGACTCTGCAATGTAGGGAGATTGAAGGATGCTATGAT
GGTCTGGAAGCACATGCTTGACCGTGGCTGTGCACCTGACACAATTGCTTATACTTCAATGATCAAGGGCTTATGTGTTT
CCGGAATGGTGGATGGTGGTCTTCGATTATTTTATGACATGCTGGCAAGTGGTCATGCTGATCCAGATGTCATCAGTTAT
AATGTCCTGCTGGATGGGCTGCTCCTGGCCAAGGACCTCCCACGGGCAATGGACTTGCTGAACAGGATGCTTGACCAGGG
GTGTGATCCAGACACGGTGACATGCAATATTTTCTTGAGGGAGTTTGGAGCTGGAGAGAGGAAGGGGAGGGAGTTCTTGG
AAGGCCTGGTTGTGAGGCTATGCGACAGAAGAAGGAATATGGCAGCTGGAGAGGTTTTAATGGTAATGCTGGCTAAGTAC
ATTGTGCCAGAGGCTCCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15677.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis