Browse Element(s) Details


OsAffx.27882.1.S1_at

Description tigr:9634.m02926
TID=OsAffx.27882.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=NB-ARC domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3043011/11NB-ARC domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g30390OsAffx.27881.1.S1_at10/116+17554779..17561527expressed protein
LOC_Os06g30390Os.7438.1.S1_at10/116+17554779..17561527expressed protein
LOC_Os06g30400NANA6+17564598..17565011hypothetical protein
LOC_Os06g30409Os.55753.1.S1_x_at1/116+17566345..17566931NA
LOC_Os06g30420OsAffx.15677.1.S1_at11/116+17576000..17577928pentatricopeptide, putative, expressed
LOC_Os06g30430OsAffx.27882.1.S1_at11/116+17583539..17585353NB-ARC domain containing protein
LOC_Os06g30440Os.13846.2.S1_at11/116+17585902..17589660GH3 auxin-responsive promoter family protein, expressed
LOC_Os06g30440Os.13846.2.S1_x_at10/116+17585902..17589660GH3 auxin-responsive promoter family protein, expressed
LOC_Os06g30440Os.13846.1.S1_at9/116+17585902..17589660GH3 auxin-responsive promoter family protein, expressed
LOC_Os06g30450NANA6+17592384..17592983hypothetical protein
LOC_Os06g30460Os.22279.1.S1_at11/116+17596802..176086742-oxo acid dehydrogenases acyltransferase family protein, expressed
LOC_Os06g30460Os.22279.3.S1_x_at9/116+17596802..176086742-oxo acid dehydrogenases acyltransferase family protein, expressed
LOC_Os06g30470OsAffx.4972.1.S1_at8/116+17608800..17611799expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0005737cellular_componentcytoplasm
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27882.1.S1_at--162--4951Chr06:17584496..17584520 (25 bp)
GCATTGCTTGCACCTGAGACGAACA
LOC_Os06g30430
OsAffx.27882.1.S1_at--766--5071Chr06:17584531..17584555 (25 bp)
GCAGCCATTGGTAAAGTCCCATGCA
LOC_Os06g30430
OsAffx.27882.1.S1_at--1104--4171Chr06:17584548..17584572 (25 bp)
CCCATGCATGGGATTTGTTCTGTAA
LOC_Os06g30430
OsAffx.27882.1.S1_at--220--7931Chr06:17584600..17584624 (25 bp)
GGATTGTCCACCAGAATTGCTCCAA
LOC_Os06g30430
OsAffx.27882.1.S1_at--762--8491Chr06:17584654..17585008 (25 bp)
TGGCTTGCCAATTGCGATCCTACAA
LOC_Os06g30430
OsAffx.27882.1.S1_at--690--5971Chr06:17585048..17585072 (25 bp)
GAGAACTCATTTCCCAGGCTCAGGG
LOC_Os06g30430
OsAffx.27882.1.S1_at--1044--8651Chr06:17585128..17585152 (25 bp)
TGTGGCAAGCCTAACTGACCTCAAG
LOC_Os06g30430
OsAffx.27882.1.S1_at--1080--2691Chr06:17585150..17585174 (25 bp)
AAGCTCTTGGTCTGTCCAAACCTGA
LOC_Os06g30430
OsAffx.27882.1.S1_at--555--5311Chr06:17585173..17585197 (25 bp)
GAAGCAGTTGCCCTACGGTATCGAA
LOC_Os06g30430
OsAffx.27882.1.S1_at--998--1391Chr06:17585274..17585298 (25 bp)
AGACGGTGATTTCTCACGTCCATCG
LOC_Os06g30430
OsAffx.27882.1.S1_at--379--1871Chr06:17585289..17585313 (25 bp)
ACGTCCATCGTGTTTATGTCGGGTT
LOC_Os06g30430
Target Sequence 
GCATTGCTTGCACCTGAGACGAACATAATTAATTTGCAGCCATTGGTAAAGTCCCATGCATGGGATTTGTTCTGTAAAGA
GGCATTCTGGAAGAATGGAAATAGGGATTGTCCACCAGAATTGCTCCAATTGGCACAAAATTTTGTTGACAAGTGCCATG
GCTTGCCAATTGCGATCCTACAACTCTATGATGCTTATGATGGGAAGAACATATACTTCCATGAGAACTCATTTCCCAGG
CTCAGGGAGCTCAGTATACGAGGTGCACCACACCTGAATGAAATCGAGATGAAAAGAGGAGCTGTGGCAAGCCTAACTGA
CCTCAAGCTCTTGGTCTGTCCAAACCTGAAGCAGTTGCCCTACGGTATCGAACATGTCAGGACTCTTGAGGAGCTCACTC
TGGACCGTGCTGCAGAAGAGCTTGTGGGCAGGGTCCGACAGAAGACAGAGACGGTGATTTCTCACGTCCATCGTGTTTAT
GTCGGGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27882.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis