Browse Element(s) Details


Os.20068.1.S1_at

Description gb:AK065724.1
DB_XREF= gi:32975742
TID=Os.20068.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.20068 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013041I23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013041I23, full insert sequence.
FL= gb:AK065724.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3038011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g30350Os.47130.4.A1_x_at1/116+17533154..17533486retrotransposon protein, putative, unclassified
LOC_Os06g30350Os.37083.2.S1_at1/116+17533154..17533486retrotransposon protein, putative, unclassified
LOC_Os06g30370Os.16218.1.S1_at11/116+17538926..17541483MOTHER of FT and TF1 protein, putative, expressed
LOC_Os06g30380Os.20068.1.S1_at11/116+17549122..17552472expressed protein
LOC_Os06g30390OsAffx.27881.1.S1_at10/116+17554779..17561527expressed protein
LOC_Os06g30390Os.7438.1.S1_at10/116+17554779..17561527expressed protein
LOC_Os06g30400NANA6+17564598..17565011hypothetical protein
LOC_Os06g30409Os.55753.1.S1_x_at1/116+17566345..17566931NA
LOC_Os06g30420OsAffx.15677.1.S1_at11/116+17576000..17577928pentatricopeptide, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20068.1.S1_at--62--4491Chr06:17551886..17551910 (25 bp)
GCCGAATTAGGTCACTGGACGGAAA
LOC_Os06g30380
Os.20068.1.S1_at--605--10091Chr06:17551974..17551998 (25 bp)
TAGGCTGGTATTCCTTGGGCCTGAA
LOC_Os06g30380
Os.20068.1.S1_at--143--7571Chr06:17551990..17552014 (25 bp)
GGGCCTGAAAGGAAATGCCACAGTT
LOC_Os06g30380
Os.20068.1.S1_at--41--2131Chr06:17552009..17552033 (25 bp)
ACAGTTGCGGTGTGGACTTTCGATG
LOC_Os06g30380
Os.20068.1.S1_at--186--5891Chr06:17552073..17552097 (25 bp)
GAGCTCAGTTCCTCGAAAGGCCTGG
LOC_Os06g30380
Os.20068.1.S1_at--168--2311Chr06:17552088..17552112 (25 bp)
AAAGGCCTGGATTTTGGCTACCCAT
LOC_Os06g30380
Os.20068.1.S1_at--943--6371Chr06:17552186..17552210 (25 bp)
GATCTCCTTTTGGAAGAAAGCGCCG
LOC_Os06g30380
Os.20068.1.S1_at--369--8031Chr06:17552221..17552245 (25 bp)
GGAGGTGCTCATATAGTTGACACAT
LOC_Os06g30380
Os.20068.1.S1_at--33--1251Chr06:17552235..17552259 (25 bp)
AGTTGACACATGACTCACTAGGAAA
LOC_Os06g30380
Os.20068.1.S1_at--405--3131Chr06:17552344..17552368 (25 bp)
AATTTCTTTAGCGAGAGGCAGCCCC
LOC_Os06g30380
Os.20068.1.S1_at--406--891Chr06:17552359..17552383 (25 bp)
AGGCAGCCCCTGAGTGTAATAGGTA
LOC_Os06g30380
Target Sequence 
GCCGAATTAGGTCACTGGACGGAAAGACAGATTGATGTGTCGGGGGTCAGTTGGGATGTGAACAGTATGGATATTGNTAT
TTCGGGGTTAGGCTGGTATTCCTTGGGCCTGAAAGGAAATGCCACAGTTGCGGTGTGGACTTTCGATGGCATTGATGTGA
CACGGCGTGATGCGATGATTNTTCACCGAGCTCAGTTCCTCGAAAGGCCTGGATTTTGGCTACCCATCGCCATCGCCAAN
TGNTATAGGTGAGGAGNCCAGGAAGAAGAATGAGAGAAGGAAGAAGGCTGAGCAAAGAGATGATCTCCTTTTGGAAGAAA
GCGCCGAGGATGATGTGGAGGTGCTCATATAGTTGACACATGACTCACTAGGAAACATATTTTTCAAGTTGATCAATGAG
AAATCATTTTCAGGATAGAAAGTAGAAGCATACATATGTTGTTAAAAGAATAGTTCTTGAATTTCTTTAGCGAGAGGCAG
CCCCTGAGTGTAATAGGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20068.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis