Browse Element(s) Details


OsAffx.4987.1.S1_at

Description tigr:9634.m03128
TID=OsAffx.4987.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to F1K23.22
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g333703/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g33330Os.37531.1.S1_at8/116+19414237..19417330expressed protein
LOC_Os06g33340Os.49603.1.S1_at11/116+19417815..19420857expressed protein
LOC_Os06g33340Os.16076.1.S1_s_at11/116+19417815..19420857expressed protein
LOC_Os06g33350Os.56283.1.S1_at11/116+19426546..19430026expressed protein
LOC_Os06g33360Os.50576.1.S1_at11/116+19433825..19438090NB-ARC domain containing protein, expressed
LOC_Os06g33360Os.50576.1.S2_at11/116+19433825..19438090NB-ARC domain containing protein, expressed
LOC_Os06g33370Os.10278.1.S1_at11/116+19438053..19440383expressed protein
LOC_Os06g33370OsAffx.4987.1.S1_at3/116+19438053..19440383expressed protein
LOC_Os06g33370Os.49603.1.S1_at1/116+19438053..19440383expressed protein
LOC_Os06g33380OsAffx.15711.1.S1_at11/116+19442466..19442869hypothetical protein
LOC_Os06g33390OsAffx.27913.1.S1_at11/116+19444693..19445286expressed protein
LOC_Os06g33400OsAffx.27914.1.S1_at11/116+19447322..19447750hypothetical protein
LOC_Os06g33410OsAffx.27915.1.S1_at8/116+19453210..19454390hypothetical protein
LOC_Os06g33420OsAffx.15712.1.S1_at10/116+19456390..19459812transposase, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4987.1.S1_at--81--1671Chr06:19441293..19441317 (25 bp)
AGCCCTCGCGACTCATGGATGGTGT
NONE
OsAffx.4987.1.S1_at--82--4091Chr06:19441285..19441309 (25 bp)
CGACTCATGGATGGTGTAGGCACTA
NONE
OsAffx.4987.1.S1_at--396--6931Chr06:19441270..19441294 (25 bp)
GTAGGCACTAGACAACAGGCATCGA
NONE
OsAffx.4987.1.S1_at--147--8251Chr06:19441267..19441291 (25 bp)
GGCACTAGACAACAGGCATCGACGT
NONE
OsAffx.4987.1.S1_at--87--3331Chr06:19441265..19441289 (25 bp)
CACTAGACAACAGGCATCGACGTCG
NONE
OsAffx.4987.1.S1_at--50--1911Chr06:19441246..19441270 (25 bp)
ACGTCGATGGCCGAGTCCACCGAGG
NONE
OsAffx.4987.1.S1_at--1036--9291NONE
TCCCCAACCTCGATCAAGGATTCAA
NONE
OsAffx.4987.1.S1_at--515--6131Chr06:19439537..19439912 (25 bp)
GAGGGCTTACCGGTTTGCAATGTCA
LOC_Os06g33370
OsAffx.4987.1.S1_at--473--1071NONE
AGGGCTTACCGGTTTGCAATGTCAA
NONE
OsAffx.4987.1.S1_at--653--1871Chr06:19439513..19439537 (25 bp)
AACTCCTTAAATCTGGTTGTTAGCT
LOC_Os06g33370
OsAffx.4987.1.S1_at--256--9251Chr06:19439510..19439534 (25 bp)
TCCTTAAATCTGGTTGTTAGCTTCC
LOC_Os06g33370
Target Sequence 
AGCCCTCGCGACTCATGGATGGTGTAGGCACTAGACAACAGGCATCGACGTCGATGGCCGAGTCCACCGAGGCCATCCCC
AACCTCGATCAAGGATTCAAGGCCCTGAGGTGGTATGGCGAGCCAGGAGAAGCCCACGCCGCCTCAGCATCCGCCTCCGC
CCCCACCGGCGCCGGAGGTCGCGCCTCGTGTGCGCGGGTTCGGACGGGCCCACCGGGCGACGGCGGAGGTGGTTACCCTA
ACCCGCCGGACGCGGCGATCCCCGACGCCGCGACGCTGCGGGAGCAGTGGCTGTTCGCGGTGCGGCAGTACAGCAGGTGG
TACTCCCACGCCTGGGGCACCGCCATCCTCGCCGGCGCCGCCTTCTTCGGACTCGGCTGGCTCGTCAAGGGCTCCAACCC
CCTCCCGTCCCGCGCTGAGCCCCACGCCTCCAACGCCAAGGAGGAGGGCTTACCGGTTTGCAATGTCAACTCCTTAAATC
TGGTTGTTAGCTTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4987.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis