Browse Element(s) Details


OsAffx.5008.1.S1_at

Description tigr:9634.m03278
TID=OsAffx.5008.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3470010/11hypothetical protein
LOC_Os11g254302/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g34650Os.51533.1.S1_at11/116+20142948..20143669Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g34660Os.56170.1.S1_at10/116+20144121..20147102glucan endo-1,3-beta-glucosidase 1 precursor, putative, expressed
LOC_Os06g34660OsAffx.5006.1.S1_at10/116+20144121..20147102glucan endo-1,3-beta-glucosidase 1 precursor, putative, expressed
LOC_Os06g34670OsAffx.31347.1.S1_at10/116+20148014..20149254hypothetical protein
LOC_Os06g34680NANA6+20149649..20150755transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g34690Os.12204.1.S1_at11/116+20157644..20164610T-complex protein 1, gamma subunit, putative, expressed
LOC_Os06g34700OsAffx.5008.1.S1_at10/116+20165748..20167757hypothetical protein
LOC_Os06g34710OsAffx.15743.1.S1_at11/116+20168369..20171314expressed protein
LOC_Os06g34720OsAffx.15744.1.S1_at11/116+20173436..20174355hypothetical protein
LOC_Os06g34730Os.20169.1.S1_at11/116+20177127..20178046expressed protein
LOC_Os06g34740OsAffx.5009.1.S1_at11/116+20190208..20191869NA

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5008.1.S1_at--187--2232Chr11:13999115..13999139 (25 bp)
ACAAGTATCATCACCTCAGCTTAGG
LOC_Os11g25430
OsAffx.5008.1.S1_at--747--4893Chr11:13998945..13998969 (25 bp)
GCTTAGGAGGTATCACCACTAGCAA
LOC_Os11g25430
OsAffx.5008.1.S1_at--846--2531Chr06:20167482..20167506 (25 bp)
AACTACATTGCTATTTGCGATACCA
LOC_Os06g34700
OsAffx.5008.1.S1_at--235--9151Chr06:20167467..20167491 (25 bp)
TGCGATACCATCACAAAAACTCTAG
LOC_Os06g34700
OsAffx.5008.1.S1_at--465--1771NONE
ACCTGGTACGATGGTCAGCGTTTCG
NONE
OsAffx.5008.1.S1_at--487--3211Chr06:20166093..20166117 (25 bp)
CAAGGTGGTGCTGCATGCTGAAAAT
LOC_Os06g34700
OsAffx.5008.1.S1_at--898--5471Chr06:20166052..20166076 (25 bp)
GAACTAGTTCTTGTGCAATTTGACA
LOC_Os06g34700
OsAffx.5008.1.S1_at--124--8631Chr06:20166023..20166047 (25 bp)
TGGTGTCACCATCTTCTCGCTGATG
LOC_Os06g34700
OsAffx.5008.1.S1_at--892--3791Chr06:20165847..20166032 (25 bp)
CTCGCTGATGTCTCCGTTGAGGAAG
LOC_Os06g34700
OsAffx.5008.1.S1_at--524--10751Chr06:20165797..20165821 (25 bp)
TTGACGCTGAGCACGTTGGTGTTGA
LOC_Os06g34700
OsAffx.5008.1.S1_at--183--7411Chr06:20165779..20165803 (25 bp)
GTGTTGATAGCCACGACGTCCAGGA
LOC_Os06g34700
Target Sequence 
ACAAGTATCATCACCTCAGCTTAGGAGGTATCACCACTAGCAACTACATTGCTATTTGCGATACCATCACAAAAACTCTA
GTGATACCTGGTACCTATATGGTATCAGATAAGACCTGGTACGATGGTCAGCGTTTCGCGCTCATCGGGGGATATGAGCA
GGCAAGGTGGTGCTGCATGCTGAAAATCGGGAATCAGGATGGAGAACTAGTTCTTGTGCAATTTGACATTGGTGGTGTCA
CCATCTTCTCGCTGATGTCTCCGTTGAGGAAGGGACAGATCGATGGGGACGTCAAGGTTGACGCTGAGCACGTTGGTGTT
GATAGCCACGACGTCCAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5008.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis