Browse Element(s) Details


OsAffx.5022.1.S1_at

Description tigr:9634.m03383
TID=OsAffx.5022.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to FIMBRIATA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3574011/11hypothetical protein
LOC_Os07g052301/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g35710OsAffx.22947.1.S1_x_at11/116+20837753..20844117retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g35710OsAffx.22947.2.S1_x_at4/116+20837753..20844117retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g35710OsAffx.22947.3.S1_x_at3/116+20837753..20844117retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g35710OsAffx.22947.5.S1_x_at3/116+20837753..20844117retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g35720NANA6+20846326..20848652retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g35730Os.38797.1.S1_at3/116+20850303..2085449360S ribosomal protein L11-1, putative, expressed
LOC_Os06g35730OsAffx.25258.2.S1_x_at2/116+20850303..2085449360S ribosomal protein L11-1, putative, expressed
LOC_Os06g35730OsAffx.25258.2.S1_at1/116+20850303..2085449360S ribosomal protein L11-1, putative, expressed
LOC_Os06g35740OsAffx.5022.1.S1_at11/116+20858957..20859831hypothetical protein
LOC_Os06g35750OsAffx.27954.1.S1_at11/116+20860227..20861352hypothetical protein
LOC_Os06g35760OsAffx.15759.1.S1_at10/116+20863870..20864853hypothetical protein
LOC_Os06g35770NANA6+20867429..20868548expressed protein
LOC_Os06g35780Os.46785.2.S1_x_at2/116+20878191..20883205retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g35790NANA6+20884780..20885037hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0009933biological_processmeristem organization
GO:0000151cellular_componentubiquitin ligase complex
GO:0004842molecular_functionubiquitin-protein ligase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5022.1.S1_at--828--4211Chr06:20859411..20859435 (25 bp)
CCGCCGCAACGAGTGGTGGTGGGCA
LOC_Os06g35740
OsAffx.5022.1.S1_at--150--7471Chr06:20859429..20859453 (25 bp)
GTGGGCACTGCTGTGCCCGTACGTC
LOC_Os06g35740
OsAffx.5022.1.S1_at--26--8659Chr11:25415031..25415051 (21 bp)
TGGGAGCCGAGCCACATGTCACGCA
NONE
OsAffx.5022.1.S1_at--814--1696Chr06:20859556..20859580 (25 bp)
AGCCACATGTCACGCACTCGGCGTG
LOC_Os06g35740
OsAffx.5022.1.S1_at--32--2019Chr06:20859571..20859595 (25 bp)
ACTCGGCGTGGAAGCCGTGCCGCAC
LOC_Os06g35740
OsAffx.5022.1.S1_at--429--7611Chr06:20859599..20859623 (25 bp)
GGGAGGAACCTAGCCTCATCGTCCT
LOC_Os06g35740
OsAffx.5022.1.S1_at--810--931Chr06:20859638..20859662 (25 bp)
AGGCACACCGCGTACTTGACACCGT
LOC_Os06g35740
OsAffx.5022.1.S1_at--465--4431Chr06:20859692..20859716 (25 bp)
GCCATGCTGCAACTGTACACCGTGA
LOC_Os06g35740
OsAffx.5022.1.S1_at--166--9111Chr06:20859696..20859720 (25 bp)
TGCTGCAACTGTACACCGTGACCGG
LOC_Os06g35740
OsAffx.5022.1.S1_at--1069--25510Chr06:20859702..20859726 (25 bp)
AACTGTACACCGTGACCGGCAGCGA
LOC_Os06g35740
OsAffx.5022.1.S1_at--644--1611Chr06:20859722..20859746 (25 bp)
AGCGACCGCAACACCTCTGGGTCAA
LOC_Os06g35740
Target Sequence 
CCGCCGCAACGAGTGGTGGTGGGCACTGCTGTGCCCGTACGTCGTCGTCGCGCATCACGGCAGCGCCGGCGGGACGGGAG
GAAGAAGAGGCGGCGACGACACGACGACGGTGAGGCGGCAGAGCGAGCAGGTGGAGTGGGAGCCGAGCCACATGTCACGC
ACTCGGCGTGGAAGCCGTGCCGCACCAGGGGAGGAACCTAGCCTCATCGTCCTCCTCGAGCTCCGCGAGGCACACCGCGT
ACTTGACACCGTCGTCCTCCTCCTCCTTCGCAGCCGGCGCCGCCATGCTGCAACTGTACACCGTGACCGGCAGCGACCGC
AACACCTCTGGGTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5022.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis