Browse Element(s) Details


OsAffx.5035.1.S1_at

Description tigr:9634.m03554
TID=OsAffx.5035.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3731011/11hypothetical protein
LOC_Os10g030401/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g572301/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g37280OsAffx.15794.1.S1_at11/116+22008519..22009313expressed protein
LOC_Os06g37290OsAffx.10426.1.S1_at3/116+22009563..22013888retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g37300Os.57506.1.S1_at10/116+22019904..22027136Ent-kaurene oxidase, putative, expressed
LOC_Os06g37300Os.6206.1.S1_x_at1/116+22019904..22027136Ent-kaurene oxidase, putative, expressed
LOC_Os06g37300Os.6206.2.S1_x_at1/116+22019904..22027136Ent-kaurene oxidase, putative, expressed
LOC_Os06g37310OsAffx.5035.1.S1_at11/116+22030571..22033705hypothetical protein
LOC_Os06g37310Os.20851.1.A1_x_at1/116+22030571..22033705hypothetical protein
LOC_Os06g37310OsAffx.19815.1.S1_at1/116+22030571..22033705hypothetical protein
LOC_Os06g37320NANA6+22037357..22040270expressed protein
LOC_Os06g37330Os.6206.1.S1_x_at11/116+22047649..22056760Ent-kaurene oxidase, putative, expressed
LOC_Os06g37330Os.6206.2.S1_x_at5/116+22047649..22056760Ent-kaurene oxidase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5035.1.S1_at--198--8851Chr06:22032987..22033011 (25 bp)
TGATCATCACCATCGCCTTTATTGA
LOC_Os06g37310
OsAffx.5035.1.S1_at--210--10751Chr06:22032966..22032990 (25 bp)
TTGAGATGGGTTCATCACCGACCAT
LOC_Os06g37310
OsAffx.5035.1.S1_at--292--9211Chr06:22032902..22032926 (25 bp)
TGCCAAGAGCCCAACACCAGAAGAA
LOC_Os06g37310
OsAffx.5035.1.S1_at--701--104326Chr12:143401..143628 (25 bp)
TTAGTGTCCTATGCATCGTCTTCGA
NONE
OsAffx.5035.1.S1_at--186--4433Chr10:2956670..2956690 (21 bp)
GCCAGTCCAGGCAATTGTATCGTTT
NONE
OsAffx.5035.1.S1_at--1009--101160Chr12:5947618..5947641 (24 bp)
TATCGTTTACGTCGGCGTCGTTCAA
NONE
OsAffx.5035.1.S1_at--980--4811Chr06:22030706..22030730 (25 bp)
GCTCTCTTTGGCCTTTAACAGATGG
LOC_Os06g37310
OsAffx.5035.1.S1_at--450--6231Chr06:22030686..22030710 (25 bp)
GATGGCCAGATGTCAGGATCCGTGC
LOC_Os06g37310
OsAffx.5035.1.S1_at--248--4871Chr06:22030663..22030687 (25 bp)
GCTAGTGACTTACCGCTAATGCCAA
LOC_Os06g37310
OsAffx.5035.1.S1_at--901--1011Chr06:22030624..22030648 (25 bp)
AGGTGCCTAGCCAGTCAGGAACTTT
LOC_Os06g37310
OsAffx.5035.1.S1_at--1015--3471Chr06:22030609..22030633 (25 bp)
CAGGAACTTTTCTACTTTGCTTGGT
LOC_Os06g37310
Target Sequence 
TGATCATCACCATCGCCTTTATTGAGATGGGTTCATCACCGACCATCGCCACCGCCACTGTGCCCACGCCCACCACCGCC
ATCCGTGCCAAGAGCCCAACACCAGAAGAAATGGGAGGGAGGAGGGGACCGCCAAAGCGAGGATGGGATGCTGCCCTGCC
GAGCTGCAAGGACAGGGAGATATGGTCATCGCAGGAAAGTGTGTTTAGTGTCCTATGCATCGTCTTCGATCTCCGGCGAA
GGGATAAGTCCAATGTTCCGCCAGTCCAGGCAATTGTATCGTTTACGTCGGCGTCGTTCAAGGCTGCATCAGTACATTCG
ACCTCTTGGATTGCTCTGGATCAAACTGACTGGCACGCTCGCATCTCACCAACCTTTGGACCTGCACTGGAGCTAAGCAG
ATCTCCCAGGCCGCTCTCTTTGGCCTTTAACAGATGGCCAGATGTCAGGATCCGTGCTAGTGACTTACCGCTAATGCCAA
AATATCAACCTCACAGGTGCCTAGCCAGTCAGGAACTTTTCTACTTTGCTTGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5035.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis