Browse Element(s) Details


OsAffx.15794.1.S1_at

Description tigr:9634.m03551
TID=OsAffx.15794.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3728011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g37224Os.53276.1.S1_at11/116+21981657..21991536Ent-kaurene oxidase, putative, expressed
LOC_Os06g37224OsAffx.29033.1.S1_at1/116+21981657..21991536Ent-kaurene oxidase, putative, expressed
LOC_Os06g37240OsAffx.15792.1.S1_at9/116+21995508..21996114hypothetical protein
LOC_Os06g37250NANA6+21997613..21998647retrotransposon protein, putative, unclassified
LOC_Os06g37260NANA6+21999278..22001859retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g37270OsAffx.15793.1.S1_at11/116+22003133..22003506hypothetical protein
LOC_Os06g37280OsAffx.15794.1.S1_at11/116+22008519..22009313expressed protein
LOC_Os06g37290OsAffx.10426.1.S1_at3/116+22009563..22013888retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g37300Os.57506.1.S1_at10/116+22019904..22027136Ent-kaurene oxidase, putative, expressed
LOC_Os06g37300Os.6206.1.S1_x_at1/116+22019904..22027136Ent-kaurene oxidase, putative, expressed
LOC_Os06g37300Os.6206.2.S1_x_at1/116+22019904..22027136Ent-kaurene oxidase, putative, expressed
LOC_Os06g37310OsAffx.5035.1.S1_at11/116+22030571..22033705hypothetical protein
LOC_Os06g37310Os.20851.1.A1_x_at1/116+22030571..22033705hypothetical protein
LOC_Os06g37310OsAffx.19815.1.S1_at1/116+22030571..22033705hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15794.1.S1_at--878--8091Chr06:22008760..22008784 (25 bp)
GGACGCCGCCCGATGGCGAGATCCT
LOC_Os06g37280
OsAffx.15794.1.S1_at--328--10691Chr06:22008814..22008838 (25 bp)
TTGCCACCGAAGGACAGGACAAGCG
LOC_Os06g37280
OsAffx.15794.1.S1_at--1135--1751Chr06:22008819..22008843 (25 bp)
ACCGAAGGACAGGACAAGCGACAGC
LOC_Os06g37280
OsAffx.15794.1.S1_at--630--7391Chr06:22008967..22008991 (25 bp)
GTGATGTTCCGCGCCAAGAGGCCGC
LOC_Os06g37280
OsAffx.15794.1.S1_at--297--891Chr06:22008985..22009009 (25 bp)
AGGCCGCCGTGCAGCCTTGTCGACG
LOC_Os06g37280
OsAffx.15794.1.S1_at--273--1891Chr06:22009007..22009031 (25 bp)
ACGTCACGTTCAGCCGGCGTACGTG
LOC_Os06g37280
OsAffx.15794.1.S1_at--38--1791Chr06:22009052..22009076 (25 bp)
ACCGTGGAGAACTACGCCAACTGCG
LOC_Os06g37280
OsAffx.15794.1.S1_at--757--8051Chr06:22009057..22009081 (25 bp)
GGAGAACTACGCCAACTGCGCCATA
LOC_Os06g37280
OsAffx.15794.1.S1_at--1035--3511Chr06:22009078..22009102 (25 bp)
CATACCCGCTAACCTGGTGGCGTAC
LOC_Os06g37280
OsAffx.15794.1.S1_at--357--1571Chr06:22009142..22009166 (25 bp)
AGCTACGTGCTCCTCATGTCGTCGG
LOC_Os06g37280
OsAffx.15794.1.S1_at--1032--3871Chr06:22009203..22009227 (25 bp)
CTGTACGGCGACATGATGGAGTATT
LOC_Os06g37280
Target Sequence 
GGACGCCGCCCGATGGCGAGATCCTCCACCTGCTCCACCTCTACTACCTGGTTCTTGCCACCGAAGGACAGGACAAGCGA
CAGCGGCGGCGGCGGCGTGGGCAGCAAGGAGGAGGAGGACGAGGCGTGGGACGAGTGGCTGGCGAAGCCGATCCACGAGC
GGATGCCATGGCAGATGCCGCCGGCGACGGAGCTGCAGGACGCCGGGGTGATGTTCCGCGCCAAGAGGCCGCCGTGCAGC
CTTGTCGACGTCACGTTCAGCCGGCGTACGTGACGGCGTGCTGGAGATCCCCACCGTGGAGAACTACGCCAACTGCGCCA
TACCCGCTAACCTGGTGGCGTACGAGCAGAACCGGGGCCGGTGGGAGATGCAGCGGGTGGCGAGCTACGTGCTCCTCATG
TCGTCGGCCGCAGCTGGAGGCCGTGACCAACTGCTACGGCGAGCTGTACGGCGACATGATGGAGTATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15794.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis