Browse Element(s) Details


Os.57506.1.S1_at

Description gb:CB618023
DB_XREF= gi:29613010
DB_XREF=OSIIEa01J18.r
CLONE=OSIIEa01J18
TID=Os.57506.1
CNT=5
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.57506 (NCBI UniGene Cluster)
UG_TITLE=Cytochrome P450-like sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3730010/11Ent-kaurene oxidase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g37240OsAffx.15792.1.S1_at9/116+21995508..21996114hypothetical protein
LOC_Os06g37250NANA6+21997613..21998647retrotransposon protein, putative, unclassified
LOC_Os06g37260NANA6+21999278..22001859retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g37270OsAffx.15793.1.S1_at11/116+22003133..22003506hypothetical protein
LOC_Os06g37280OsAffx.15794.1.S1_at11/116+22008519..22009313expressed protein
LOC_Os06g37290OsAffx.10426.1.S1_at3/116+22009563..22013888retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g37300Os.57506.1.S1_at10/116+22019904..22027136Ent-kaurene oxidase, putative, expressed
LOC_Os06g37300Os.6206.1.S1_x_at1/116+22019904..22027136Ent-kaurene oxidase, putative, expressed
LOC_Os06g37300Os.6206.2.S1_x_at1/116+22019904..22027136Ent-kaurene oxidase, putative, expressed
LOC_Os06g37310OsAffx.5035.1.S1_at11/116+22030571..22033705hypothetical protein
LOC_Os06g37310Os.20851.1.A1_x_at1/116+22030571..22033705hypothetical protein
LOC_Os06g37310OsAffx.19815.1.S1_at1/116+22030571..22033705hypothetical protein
LOC_Os06g37320NANA6+22037357..22040270expressed protein
LOC_Os06g37330Os.6206.1.S1_x_at11/116+22047649..22056760Ent-kaurene oxidase, putative, expressed
LOC_Os06g37330Os.6206.2.S1_x_at5/116+22047649..22056760Ent-kaurene oxidase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0009686biological_processgibberellic acid biosynthesis
GO:0009740biological_processgibberellic acid mediated signaling
GO:0005792cellular_componentmicrosome
GO:0009707cellular_componentchloroplast outer membrane
GO:0010241molecular_functionent-kaurene oxidase activity
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57506.1.S1_at--553--711Chr06:22020424..22020448 (25 bp)
ATGATGATCAACGTGTACGCGTGCC
LOC_Os06g37300
Os.57506.1.S1_at--456--3631Chr06:22020158..22020182 (25 bp)
CTTGAAGCTTGACCCGCTGCATGTC
LOC_Os06g37300
Os.57506.1.S1_at--980--7371Chr06:22020110..22020134 (25 bp)
GTGAGCTAGAAGAAGCAGTTCCATG
LOC_Os06g37300
Os.57506.1.S1_at--715--2711Chr06:22020098..22020122 (25 bp)
AAGCAGTTCCATGCATGATGAAGAA
LOC_Os06g37300
Os.57506.1.S1_at--587--6511Chr06:22020068..22020092 (25 bp)
GATATTCTCGAACGTATTTTGCAGG
LOC_Os06g37300
Os.57506.1.S1_at--1085--9491Chr06:22020063..22020087 (25 bp)
TCTCGAACGTATTTTGCAGGATGAA
LOC_Os06g37300
Os.57506.1.S1_at--556--9771Chr06:22020021..22020045 (25 bp)
TAATGGTATATACTACCTCTGGTTT
LOC_Os06g37300
Os.57506.1.S1_at--709--2411Chr06:22019982..22020006 (25 bp)
AAAAAATGTATGTGCACTGCTAGGG
LOC_Os06g37300
Os.57506.1.S1_at--527--10171Chr06:22019944..22019968 (25 bp)
TATCATGAACATCGTAGTATTTTTT
LOC_Os06g37300
Os.57506.1.S1_at--499--9513Chr10:21083964..21084003 (25 bp)
TAAAATGTACGACGCCAACGTTTGA
NONE
Os.57506.1.S1_at--941--10232Chr01:15794853..15794958 (25 bp)
TTTGACCATTCGTCCCTTATATATT
NONE
Target Sequence 
ATGATGATCAACGTGTACGCGTGCCACATGGACGAGAAGGTGTGGGAGTCGCCGGGGGAGTGGTCGCCGGAGAGGTTCCT
CGGCGAGGGGTTCGAGGTGGCGGACAGGTACAAGACGATGGCGTTCGGCGCCGGGAGGAGGACCTGCGCGGGGAGCCTGC
AGGCGATNGAACATCGCGTGCGTCGCCGTGGCGCGCCTCGTGCAGGAGCTCGAGTGGAGGCTGAGGGAGGGCGACGGGGA
CAAGGAGGACACCATGCAGTTCACCGNCCTTGAAGCTTGACCCGCTGCATGTCCACCTCAAGCCCAGAGGAAGGATGTGA
GCTAGAAGAAGCAGTTCCATGCATGATGAAGAATTAATGATATTCTCGAACGTATTTTGCAGGATGAATAGTGATATTAA
AAATATAATGGTATATACTACCTCTGGTTTTTTAATATGCTAGAAAAAAATGTATGTGCACTGCTAGGGGAGAAATTAAA
TTTATCATGAACATCGTAGTATTTTTTTTTAAAATGTACGACGCCAACGTTTGACCATTCGTCCCTTATATATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57506.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis