Browse Element(s) Details


OsAffx.15793.1.S1_at

Description tigr:9634.m03549
TID=OsAffx.15793.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3727011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g37210OsAffx.15791.1.S1_at11/116+21980417..21980713hypothetical protein
LOC_Os06g37224Os.53276.1.S1_at11/116+21981657..21991536Ent-kaurene oxidase, putative, expressed
LOC_Os06g37224OsAffx.29033.1.S1_at1/116+21981657..21991536Ent-kaurene oxidase, putative, expressed
LOC_Os06g37240OsAffx.15792.1.S1_at9/116+21995508..21996114hypothetical protein
LOC_Os06g37250NANA6+21997613..21998647retrotransposon protein, putative, unclassified
LOC_Os06g37260NANA6+21999278..22001859retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g37270OsAffx.15793.1.S1_at11/116+22003133..22003506hypothetical protein
LOC_Os06g37280OsAffx.15794.1.S1_at11/116+22008519..22009313expressed protein
LOC_Os06g37290OsAffx.10426.1.S1_at3/116+22009563..22013888retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g37300Os.57506.1.S1_at10/116+22019904..22027136Ent-kaurene oxidase, putative, expressed
LOC_Os06g37300Os.6206.1.S1_x_at1/116+22019904..22027136Ent-kaurene oxidase, putative, expressed
LOC_Os06g37300Os.6206.2.S1_x_at1/116+22019904..22027136Ent-kaurene oxidase, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15793.1.S1_at--54--5171Chr06:22003183..22003207 (25 bp)
GCAACCGCCAGTAATTCCTGCTGAG
LOC_Os06g37270
OsAffx.15793.1.S1_at--936--7072Chr06:22003193..22003217 (25 bp)
GTAATTCCTGCTGAGCAGCCAATCT
LOC_Os06g37270
OsAffx.15793.1.S1_at--966--9111Chr06:22003201..22003225 (25 bp)
TGCTGAGCAGCCAATCTTCTGGTAC
LOC_Os06g37270
OsAffx.15793.1.S1_at--237--3071Chr06:22003213..22003336 (25 bp)
AATCTTCTGGTACCCTCGGATATCA
LOC_Os06g37270
OsAffx.15793.1.S1_at--391--10611Chr06:22003217..22003414 (25 bp)
TTCTGGTACCCTCGGATATCAGCCA
LOC_Os06g37270
OsAffx.15793.1.S1_at--237--7851Chr06:22003221..22003418 (25 bp)
GGTACCCTCGGATATCAGCCAGCCT
LOC_Os06g37270
OsAffx.15793.1.S1_at--1010--3371Chr06:22003413..22003437 (25 bp)
CAGCCTCCTCCAACTGTTAGAAAAA
LOC_Os06g37270
OsAffx.15793.1.S1_at--774--2951Chr06:22003437..22003461 (25 bp)
AATGGCCAACCAATCGTTTATGCTG
LOC_Os06g37270
OsAffx.15793.1.S1_at--351--8431Chr06:22003440..22003464 (25 bp)
GGCCAACCAATCGTTTATGCTGCAG
LOC_Os06g37270
OsAffx.15793.1.S1_at--115--2651Chr06:22003444..22003468 (25 bp)
AACCAATCGTTTATGCTGCAGCAAA
LOC_Os06g37270
OsAffx.15793.1.S1_at--931--6811Chr06:22003452..22003476 (25 bp)
GTTTATGCTGCAGCAAAGCTACCTA
LOC_Os06g37270
Target Sequence 
GCAACCGCCAGTAATTCCTGCTGAGCAGCCAATCTTCTGGTACCCTCGGATATCAGCCAGCCTCCTCCAACTGTTAGAAA
AAATGGCCAACCAATCGTTTATGCTGCAGCAAAGCTACCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15793.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis