Browse Element(s) Details


OsAffx.15791.1.S1_at

Description tigr:9634.m03543
TID=OsAffx.15791.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3721011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g37160Os.15320.1.S1_at10/116+21954184..21958747Endomembrane protein 70 containing protein, expressed
LOC_Os06g37170NANA6+21960364..21960660hypothetical protein
LOC_Os06g37180Os.8065.1.S1_at11/116+21962111..21967776Vacuolar ATP synthase subunit B isoform 1, putative, expressed
LOC_Os06g37190OsAffx.15790.1.S1_at2/116+21975117..21975752hypothetical protein
LOC_Os06g37200OsAffx.27974.1.S1_at11/116+21977311..21977643hypothetical protein
LOC_Os06g37210OsAffx.15791.1.S1_at11/116+21980417..21980713hypothetical protein
LOC_Os06g37224Os.53276.1.S1_at11/116+21981657..21991536Ent-kaurene oxidase, putative, expressed
LOC_Os06g37224OsAffx.29033.1.S1_at1/116+21981657..21991536Ent-kaurene oxidase, putative, expressed
LOC_Os06g37240OsAffx.15792.1.S1_at9/116+21995508..21996114hypothetical protein
LOC_Os06g37250NANA6+21997613..21998647retrotransposon protein, putative, unclassified
LOC_Os06g37260NANA6+21999278..22001859retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g37270OsAffx.15793.1.S1_at11/116+22003133..22003506hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15791.1.S1_at--287--6151Chr06:21980468..21980492 (25 bp)
GAGGTGAACATGCTCAGCCGCCGCA
LOC_Os06g37210
OsAffx.15791.1.S1_at--1113--2591Chr06:21980537..21980561 (25 bp)
AACGCCGTGAACTGCGCCCCTGGGA
LOC_Os06g37210
OsAffx.15791.1.S1_at--631--3831Chr06:21980556..21980580 (25 bp)
CTGGGAGCAGCCTTGGCGGCTACCC
LOC_Os06g37210
OsAffx.15791.1.S1_at--500--7271Chr06:21980581..21980605 (25 bp)
GTCCATCACCTACCGGATGATGCCA
LOC_Os06g37210
OsAffx.15791.1.S1_at--553--1731Chr06:21980608..21980632 (25 bp)
ACCATTGCCAGATGCGCTAGAGCCG
LOC_Os06g37210
OsAffx.15791.1.S1_at--682--10691Chr06:21980612..21980636 (25 bp)
TTGCCAGATGCGCTAGAGCCGCCAA
LOC_Os06g37210
OsAffx.15791.1.S1_at--537--1291Chr06:21980617..21980641 (25 bp)
AGATGCGCTAGAGCCGCCAACAACG
LOC_Os06g37210
OsAffx.15791.1.S1_at--1109--4391Chr06:21980632..21980656 (25 bp)
GCCAACAACGACCACCATGATGAGA
LOC_Os06g37210
OsAffx.15791.1.S1_at--582--5851Chr06:21980641..21980665 (25 bp)
GACCACCATGATGAGAAGGACGAGC
LOC_Os06g37210
OsAffx.15791.1.S1_at--229--2931Chr06:21980656..21980680 (25 bp)
AAGGACGAGCCGTGCAACAGCTATG
LOC_Os06g37210
OsAffx.15791.1.S1_at--112--5791Chr06:21980659..21980683 (25 bp)
GACGAGCCGTGCAACAGCTATGGTG
LOC_Os06g37210
Target Sequence 
GAGGTGAACATGCTCAGCCGCCGCACGTACTCCTCCGGCCCCGAGTACTCCCGCCCGTGCCGCCTCACGAACGCCGTGAA
CTGCGCCCCTGGGAGCAGCCTTGGCGGCTACCCGTCCATCACCTACCGGATGATGCCACCACCATTGCCAGATGCGCTAG
AGCCGCCAACAACGACCACCATGATGAGAAGGACGAGCCGTGCAACAGCTATGGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15791.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis