Browse Element(s) Details


OsAffx.27974.1.S1_at

Description tigr:9634.m03542
TID=OsAffx.27974.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3720011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g37150Os.49627.1.S1_at11/116+21950204..21954135L-ascorbate oxidase, putative, expressed
LOC_Os06g37150Os.49627.2.S1_x_at6/116+21950204..21954135L-ascorbate oxidase, putative, expressed
LOC_Os06g37160Os.15320.1.S1_at10/116+21954184..21958747Endomembrane protein 70 containing protein, expressed
LOC_Os06g37170NANA6+21960364..21960660hypothetical protein
LOC_Os06g37180Os.8065.1.S1_at11/116+21962111..21967776Vacuolar ATP synthase subunit B isoform 1, putative, expressed
LOC_Os06g37190OsAffx.15790.1.S1_at2/116+21975117..21975752hypothetical protein
LOC_Os06g37200OsAffx.27974.1.S1_at11/116+21977311..21977643hypothetical protein
LOC_Os06g37210OsAffx.15791.1.S1_at11/116+21980417..21980713hypothetical protein
LOC_Os06g37224Os.53276.1.S1_at11/116+21981657..21991536Ent-kaurene oxidase, putative, expressed
LOC_Os06g37224OsAffx.29033.1.S1_at1/116+21981657..21991536Ent-kaurene oxidase, putative, expressed
LOC_Os06g37240OsAffx.15792.1.S1_at9/116+21995508..21996114hypothetical protein
LOC_Os06g37250NANA6+21997613..21998647retrotransposon protein, putative, unclassified
LOC_Os06g37260NANA6+21999278..22001859retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27974.1.S1_at--368--3511Chr06:21977563..21977587 (25 bp)
CATGTCTCTCTTACAACTTGCCGGT
LOC_Os06g37200
OsAffx.27974.1.S1_at--875--2491Chr06:21977549..21977573 (25 bp)
AACTTGCCGGTCGAAGGAGGACTCG
LOC_Os06g37200
OsAffx.27974.1.S1_at--1010--9431Chr06:21977527..21977551 (25 bp)
TCGGCAACTAAGTCCAAGGTGGCGC
LOC_Os06g37200
OsAffx.27974.1.S1_at--167--5151Chr06:21977493..21977517 (25 bp)
GCAACAGAGGCATGCCGAAGTCCGC
LOC_Os06g37200
OsAffx.27974.1.S1_at--1002--7691Chr06:21977457..21977481 (25 bp)
GGGTCCATAGGTCGTCGTACATGCC
LOC_Os06g37200
OsAffx.27974.1.S1_at--271--9331Chr06:21977420..21977444 (25 bp)
TCGCCGCTGTAGCTTTCCGAATGCT
LOC_Os06g37200
OsAffx.27974.1.S1_at--1071--4871Chr06:21977409..21977433 (25 bp)
GCTTTCCGAATGCTCCCTCTAGGAG
LOC_Os06g37200
OsAffx.27974.1.S1_at--86--10091Chr06:21977390..21977414 (25 bp)
TAGGAGCTCGTCCTGAACTCTGTGT
LOC_Os06g37200
OsAffx.27974.1.S1_at--65--8991Chr06:21977377..21977401 (25 bp)
TGAACTCTGTGTGTCCTCATCATTC
LOC_Os06g37200
OsAffx.27974.1.S1_at--64--7471Chr06:21977367..21977391 (25 bp)
GTGTCCTCATCATTCGGTCGGTGCG
LOC_Os06g37200
OsAffx.27974.1.S1_at--965--7291Chr06:21977347..21977371 (25 bp)
GTGCGCCGCAATAGGTCATGGCAGT
LOC_Os06g37200
Target Sequence 
CATGTCTCTCTTACAACTTGCCGGTCGAAGGAGGACTCGGCAACTAAGTCCAAGGTGGCGCAGAGGAGGAGCAACAGAGG
CATGCCGAAGTCCGCGCGCCGGGGCGGGGTCCATAGGTCGTCGTACATGCCTCGTCAGCGGCCTCGCCGCTGTAGCTTTC
CGAATGCTCCCTCTAGGAGCTCGTCCTGAACTCTGTGTGTCCTCATCATTCGGTCGGTGCGCCGCAATAGGTCATGGCAG
T

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27974.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis