CREP Browser

Os.49627.2.S1_x_at

Description

gb:AB004799.1
DB_XREF= gi:2208904
TID=Os.49627.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.49627 (NCBI UniGene Cluster)
UG_TITLE=MRNA for ascorbate oxidase, partial cds
DEF=Oryza sativa mRNA for ascorbate oxidase, partial cds.
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g37150	6/11	L-ascorbate oxidase, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g37130	NA	NA	6	+	21930577..21930972	hypothetical protein
LOC_Os06g37140	Os.36149.1.S1_x_at	2/11	6	+	21935890..21942002	expressed protein
LOC_Os06g37140	OsAffx.8676.1.S1_at	2/11	6	+	21935890..21942002	expressed protein
LOC_Os06g37150	Os.49627.1.S1_at	11/11	6	+	21950204..21954135	L-ascorbate oxidase, putative, expressed
LOC_Os06g37150	Os.49627.2.S1_x_at	6/11	6	+	21950204..21954135	L-ascorbate oxidase, putative, expressed
LOC_Os06g37160	Os.15320.1.S1_at	10/11	6	+	21954184..21958747	Endomembrane protein 70 containing protein, expressed
LOC_Os06g37170	NA	NA	6	+	21960364..21960660	hypothetical protein
LOC_Os06g37180	Os.8065.1.S1_at	11/11	6	+	21962111..21967776	Vacuolar ATP synthase subunit B isoform 1, putative, expressed
LOC_Os06g37190	OsAffx.15790.1.S1_at	2/11	6	+	21975117..21975752	hypothetical protein
LOC_Os06g37200	OsAffx.27974.1.S1_at	11/11	6	+	21977311..21977643	hypothetical protein

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Gene Ontology Classification

GO id	Type	Name
GO:0005507	molecular_function	copper ion binding
GO:0008447	molecular_function	L-ascorbate oxidase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.49627.2.S1_x_at--989--143	1	NONE	AGAAGCTCCTCAACCAAGAACGTGG	NONE
Os.49627.2.S1_x_at--209--263	1	NONE	AACCAAGAACGTGGAGACCCTGCGT	NONE
Os.49627.2.S1_x_at--206--139	1	NONE	AGACCCTGCGTCGACGATCAGAAGA	NONE
Os.49627.2.S1_x_at--58--419	1	Chr06:21952593..21952617 (25 bp)	CCCTGTCGTGTTCAATGTCGAGCAG	LOC_Os06g37150
Os.49627.2.S1_x_at--116--251	1	Chr06:21952621..21952645 (25 bp)	AAGACTTACCGCCTTAGGATCGCCA	LOC_Os06g37150
Os.49627.2.S1_x_at--285--1059	1	Chr06:21952659..21952683 (25 bp)	TTCTCTCCTCAACGTCAAGATTCAA	LOC_Os06g37150
Os.49627.2.S1_x_at--383--809	1	NONE	GGAGCCGTTTGTGGTCGACGACATC	NONE
Os.49627.2.S1_x_at--59--567	1	NONE	GACATCGACATTTACTCCGGCGAGA	NONE
Os.49627.2.S1_x_at--396--145	1	Chr06:21953027..21953051 (25 bp)	AGAAGCCGGCGAGCTACTGGATCTC	LOC_Os06g37150
Os.49627.2.S1_x_at--995--737	1	Chr06:21953164..21953188 (25 bp)	GTGACGCCGGCGTGGAACGACACAC	LOC_Os06g37150
Os.49627.2.S1_x_at--717--817	1	Chr06:21953177..21953201 (25 bp)	GGAACGACACACAGCGCAGCAAGGC	LOC_Os06g37150

Target Sequence

AGAAGCTCCTCAACCAAGAACGTGGAGACCCTGCGTCGACGATCAGAAGATGTGCAGCGACCAGGAGAAGTGCTGAGGAG
GAGCGAGTGGGGCCGTACTGCCCCAGGAGCCAGTGCGCCCCTGTCGTGTTCAATGTCGAGCAGGGGAAGACTTACCGCCT
TAGGATCGCCAGCACCACCTCCCTTTCTCTCCTCAACGTCAAGATTCAAGGGAACAAGATGACGGTGGTGGAGGCCGACG
GGAACCACGTGGAGCCGTTTGTGGTCGACGACATCGACATTTACTCCGGCGAGAGCTACTCCGTCTTCTTCAAGGCCGAC
CAGAAGCCGGCGAGCTACTGGATCTCCGTCGGCGTCAGGGGGCGCCACCCCAAGACGGTGCCGGCGCTCGCCATCCTCAG
CTACGGCAACGGCAACGCGGCGCCGCCGCCGCTCCAGCTGCCCGCCGGCGAGCCCCCCGTGACGCCGGCGTGGAACGACA
CACAGCGCAGCAAGGC

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis

Browse Element(s) Details