Browse Element(s) Details


OsAffx.15790.1.S1_at

Description tigr:9634.m03541
TID=OsAffx.15790.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g371902/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g37150Os.49627.1.S1_at11/116+21950204..21954135L-ascorbate oxidase, putative, expressed
LOC_Os06g37150Os.49627.2.S1_x_at6/116+21950204..21954135L-ascorbate oxidase, putative, expressed
LOC_Os06g37160Os.15320.1.S1_at10/116+21954184..21958747Endomembrane protein 70 containing protein, expressed
LOC_Os06g37170NANA6+21960364..21960660hypothetical protein
LOC_Os06g37180Os.8065.1.S1_at11/116+21962111..21967776Vacuolar ATP synthase subunit B isoform 1, putative, expressed
LOC_Os06g37190OsAffx.15790.1.S1_at2/116+21975117..21975752hypothetical protein
LOC_Os06g37200OsAffx.27974.1.S1_at11/116+21977311..21977643hypothetical protein
LOC_Os06g37210OsAffx.15791.1.S1_at11/116+21980417..21980713hypothetical protein
LOC_Os06g37224Os.53276.1.S1_at11/116+21981657..21991536Ent-kaurene oxidase, putative, expressed
LOC_Os06g37224OsAffx.29033.1.S1_at1/116+21981657..21991536Ent-kaurene oxidase, putative, expressed
LOC_Os06g37240OsAffx.15792.1.S1_at9/116+21995508..21996114hypothetical protein
LOC_Os06g37250NANA6+21997613..21998647retrotransposon protein, putative, unclassified
LOC_Os06g37260NANA6+21999278..22001859retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15790.1.S1_at--444--4611NONE
GCGAGTTTCGTGAAGCTGGTGTTCC
NONE
OsAffx.15790.1.S1_at--240--6831Chr06:21975165..21975187 (23 bp)
GTTTCGTGAAGCTGGTGTTCCCCGG
LOC_Os06g37190
OsAffx.15790.1.S1_at--1128--8391NONE
GGCGCGGACCGGAGGTTTTCTGAGA
NONE
OsAffx.15790.1.S1_at--490--4071NONE
CGACCAACCTGTTAGACCTCCGGAG
NONE
OsAffx.15790.1.S1_at--241--4271NONE
CCTGTTAGACCTCCGGAGCCCAAGT
NONE
OsAffx.15790.1.S1_at--216--4491NONE
GCCGGCGCAGGCGTGTCGGTAAAAA
NONE
OsAffx.15790.1.S1_at--698--9811NONE
TAAAAAAGGGCACTTCGGCTGGCGC
NONE
OsAffx.15790.1.S1_at--739--2411NONE
AAAAAGGGCACTTCGGCTGGCGCCG
NONE
OsAffx.15790.1.S1_at--504--10471NONE
TTACAAGGTAGTCCGGCCGCCGCAA
NONE
OsAffx.15790.1.S1_at--3--1631NONE
AGCTGGCTCAGGTTACCTGGTCGGC
NONE
OsAffx.15790.1.S1_at--1068--4111Chr06:21975535..21975559 (25 bp)
CGCAGCCGAGTATGCCCCGCGATGG
LOC_Os06g37190
Target Sequence 
GCGAGTTTCGTGAAGCTGGTGTTCCCCGGCGGCCACGTCGAGCTGCTCGACCGGGCGGAGCCGGGCGTTCGGAGGTGATG
GCGCGGCCACCCGCGGTTCGAGGTGGCGCGGACCGGAGGTTTTCTGAGACCCCCGCGCGCGGCCGGTTTCAGCTTACGGG
GTCGGGACGCCGTGCCGGGGAACCGCAACCCGAGTCCGACCAACCTGTTAGACCTCCGGAGCCCAAGTTAAAAAGACGCG
CCCCAAGAAGCACCCGTCCCGGCGGGCGCAAGATAAAGGAAAGGGGTGGTCCATCCTCCCTCCCCCGCACCGCCGGCGCA
GGCGTGTCGGTAAAAAAGGGCACTTCGGCTGGCGCCGGCCGGCCCCCGAGAAGGGGTTACAAGGTAGTCCGGCCGCCGCA
AGAGCTGGCTCAGGTTACCTGGTCGGCGGCGGCGGGAAGCCGCAGCCGAGTATGCCCCGCGATGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15790.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis