Browse Element(s) Details


OsAffx.15792.1.S1_at

Description tigr:9634.m03546
TID=OsAffx.15792.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g372409/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g37190OsAffx.15790.1.S1_at2/116+21975117..21975752hypothetical protein
LOC_Os06g37200OsAffx.27974.1.S1_at11/116+21977311..21977643hypothetical protein
LOC_Os06g37210OsAffx.15791.1.S1_at11/116+21980417..21980713hypothetical protein
LOC_Os06g37224Os.53276.1.S1_at11/116+21981657..21991536Ent-kaurene oxidase, putative, expressed
LOC_Os06g37224OsAffx.29033.1.S1_at1/116+21981657..21991536Ent-kaurene oxidase, putative, expressed
LOC_Os06g37240OsAffx.15792.1.S1_at9/116+21995508..21996114hypothetical protein
LOC_Os06g37250NANA6+21997613..21998647retrotransposon protein, putative, unclassified
LOC_Os06g37260NANA6+21999278..22001859retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g37270OsAffx.15793.1.S1_at11/116+22003133..22003506hypothetical protein
LOC_Os06g37280OsAffx.15794.1.S1_at11/116+22008519..22009313expressed protein
LOC_Os06g37290OsAffx.10426.1.S1_at3/116+22009563..22013888retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g37300Os.57506.1.S1_at10/116+22019904..22027136Ent-kaurene oxidase, putative, expressed
LOC_Os06g37300Os.6206.1.S1_x_at1/116+22019904..22027136Ent-kaurene oxidase, putative, expressed
LOC_Os06g37300Os.6206.2.S1_x_at1/116+22019904..22027136Ent-kaurene oxidase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15792.1.S1_at--34--1191Chr06:21995451..21995475 (25 bp)
AGTACCCAGGTAGGCACGGGCAGCA
NONE
OsAffx.15792.1.S1_at--744--4991Chr06:21995506..21995530 (25 bp)
GCATGGCGACGAACTCAATAACTGA
NONE
OsAffx.15792.1.S1_at--296--5671Chr06:21995721..21995745 (25 bp)
GACATGCTTCATGGATTTTGTTCAA
LOC_Os06g37240
OsAffx.15792.1.S1_at--262--1071Chr06:21995769..21995793 (25 bp)
AGGGTACTTGGAGGTTGCACATGTC
LOC_Os06g37240
OsAffx.15792.1.S1_at--788--771Chr06:21995789..21995813 (25 bp)
ATGTCCAGCACTATGATGTCCTCAA
LOC_Os06g37240
OsAffx.15792.1.S1_at--805--8851Chr06:21995802..21995826 (25 bp)
TGATGTCCTCAAAACTTTTCCAGAG
LOC_Os06g37240
OsAffx.15792.1.S1_at--351--4871Chr06:21995847..21995871 (25 bp)
GCTAGTCATGTTTGATCTGCACAAT
LOC_Os06g37240
OsAffx.15792.1.S1_at--1--8791Chr06:21995898..21995922 (25 bp)
TGTTTATTCTGATCCGTCTGAGCCA
LOC_Os06g37240
OsAffx.15792.1.S1_at--695--7171Chr06:21995913..21995937 (25 bp)
GTCTGAGCCATTCAAGCCTATCAAT
LOC_Os06g37240
OsAffx.15792.1.S1_at--59--5451Chr06:21995980..21996004 (25 bp)
GAACCCGATGGTGATAACTATCTTA
LOC_Os06g37240
OsAffx.15792.1.S1_at--1117--7931Chr06:21996060..21996084 (25 bp)
GGATAGTGTCCCTGTAAATCAATCT
LOC_Os06g37240
Target Sequence 
AGTACCCAGGTAGGCACGGGCAGCAACCCCCAGGATGGTGCGGCCAGACAGCCCGGCATGGCGACGAACTCAATAACTGA
GTTATCAGACTCTAATTTTTTGCTAAAGATAAATCTGATTGGCAATCACAGAAAGATGAGAAAGGATATTAAATGTTGGA
ATTTTGAGATGATTGTTGATTCAGACAGGACATGCTTCATGGATTTTGTTCAATCAGTTGTTGACAAGTATCCCCCAGGG
TACTTGGAGGTTGCACATGTCCAGCACTATGATGTCCTCAAAACTTTTCCAGAGGTTAACTCAGACCAAGAGTTGCTAGT
CATGTTTGATCTGCACAATAAGAAGAAGGTTGTAGAAATGTTCATTGTTTATTCTGATCCGTCTGAGCCATTCAAGCCTA
TCAATGAGTGGGAATTTGAAGAGGAAGAGCAACCTGACAACAACATAGAACCCGATGGTGATAACTATCTTAGTAATCCT
AATCCATTGAATGAGCATGTTGGTGTTGATGAGGAGAGTATGTACTTGGATAGTGTCCCTGTAAATCAATCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15792.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis