Browse Element(s) Details


Os.53276.1.S1_at

Description gb:AK071743.1
DB_XREF= gi:32981766
TID=Os.53276.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53276 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023111A19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023111A19, full insert sequence.
FL= gb:AK071743.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3722411/11Ent-kaurene oxidase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g37160Os.15320.1.S1_at10/116+21954184..21958747Endomembrane protein 70 containing protein, expressed
LOC_Os06g37170NANA6+21960364..21960660hypothetical protein
LOC_Os06g37180Os.8065.1.S1_at11/116+21962111..21967776Vacuolar ATP synthase subunit B isoform 1, putative, expressed
LOC_Os06g37190OsAffx.15790.1.S1_at2/116+21975117..21975752hypothetical protein
LOC_Os06g37200OsAffx.27974.1.S1_at11/116+21977311..21977643hypothetical protein
LOC_Os06g37210OsAffx.15791.1.S1_at11/116+21980417..21980713hypothetical protein
LOC_Os06g37224Os.53276.1.S1_at11/116+21981657..21991536Ent-kaurene oxidase, putative, expressed
LOC_Os06g37224OsAffx.29033.1.S1_at1/116+21981657..21991536Ent-kaurene oxidase, putative, expressed
LOC_Os06g37240OsAffx.15792.1.S1_at9/116+21995508..21996114hypothetical protein
LOC_Os06g37250NANA6+21997613..21998647retrotransposon protein, putative, unclassified
LOC_Os06g37260NANA6+21999278..22001859retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g37270OsAffx.15793.1.S1_at11/116+22003133..22003506hypothetical protein
LOC_Os06g37280OsAffx.15794.1.S1_at11/116+22008519..22009313expressed protein
LOC_Os06g37290OsAffx.10426.1.S1_at3/116+22009563..22013888retrotransposon protein, putative, Ty1-copia subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0000162biological_processtryptophan biosynthesis
GO:0006118biological_processelectron transport
GO:0009641biological_processshade avoidance
GO:0009684biological_processindoleacetic acid biosynthesis
GO:0009686biological_processgibberellic acid biosynthesis
GO:0009699biological_processphenylpropanoid biosynthesis
GO:0009740biological_processgibberellic acid mediated signaling
GO:0009759biological_processindole glucosinolate biosynthesis
GO:0009809biological_processlignin biosynthesis
GO:0010114biological_processresponse to red light
GO:0005739cellular_componentmitochondrion
GO:0005792cellular_componentmicrosome
GO:0009707cellular_componentchloroplast outer membrane
GO:0004497molecular_functionmonooxygenase activity
GO:0010241molecular_functionent-kaurene oxidase activity
GO:0016709molecular_functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD or NADH as one donor, and incorporation of one atom of oxygen
GO:0019825molecular_functionoxygen binding
GO:0046409molecular_functionp-coumarate 3-hydroxylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53276.1.S1_at--336--5091Chr06:21982161..21982185 (25 bp)
GCACCCAGGTGATGATCAACGTGTT
LOC_Os06g37224
Os.53276.1.S1_at--410--991Chr06:21981912..21981936 (25 bp)
AGGAGGATACCATGCAGTACACTGC
LOC_Os06g37224
Os.53276.1.S1_at--380--5031Chr06:21981899..21981923 (25 bp)
GCAGTACACTGCCTTGAAGCTTCAC
LOC_Os06g37224
Os.53276.1.S1_at--448--7971Chr06:21981839..21981863 (25 bp)
GGATCGATCGATGTGAGCCAGAAGA
LOC_Os06g37224
Os.53276.1.S1_at--452--3411Chr06:21981821..21981845 (25 bp)
CAGAAGAAGCTAGCGGTTCCATGAT
LOC_Os06g37224
Os.53276.1.S1_at--153--2711Chr06:21981815..21981839 (25 bp)
AAGCTAGCGGTTCCATGATGAAGGC
LOC_Os06g37224
Os.53276.1.S1_at--606--6431Chr06:21981782..21981806 (25 bp)
GATCATACCATCTCTGTTTTCTTAA
LOC_Os06g37224
Os.53276.1.S1_at--590--1731Chr06:21981776..21981800 (25 bp)
ACCATCTCTGTTTTCTTAATTAATA
LOC_Os06g37224
Os.53276.1.S1_at--681--2291Chr06:21981741..21981766 (25 bp)
AAATGTCTTGCATTGTAACGGGTGC
LOC_Os06g37224
Os.53276.1.S1_at--730--8731Chr06:21981728..21981752 (25 bp)
TGTAACGGGTGCTATGGCAACTACT
LOC_Os06g37224
Os.53276.1.S1_at--477--8951Chr06:21981682..21981706 (25 bp)
TGAAACATTGAAACCGTTATACGTT
LOC_Os06g37224
Target Sequence 
GCACCCAGGTGATGATCAACGTGTTCGGGTGCCACATGGACGAGGAGGCCTGGGAGTCGCCCGGAGAGTGGTCGCCGGAG
AGATTCCTCGGCGAGGGGTTCAAGTTGGCCGACAGGTACAAGACGCTGGCGTTCGGCGCCGGGAGGAGGACCTGCGCGGG
GAGCCAGCAGGCGGTGAGCATCGCGTGCGTCGCCATCGCGCGCTTCGTGCAGGAGCTCCAGTGGACGCTGAGGGAGGGCG
ACGGTGATAAGGAGGATACCATGCAGTACACTGCCTTGAAGCTTCACCCGCTGCACGTGCACCTCAAGCCCAGAGGAAGC
TAGGATCGATCGATGTGAGCCAGAAGAAGCTAGCGGTTCCATGATGAAGGCTAAATAATGATCATACCATCTCTGTTTTC
TTAATTAATATATTAGAAAAAATGTCTTGCATTGTAACGGGTGCTATGGCAACTACTATTAGAAGATGTGCAATAAATTG
AAACATTGAAACCGTTATACGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53276.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis