Browse Element(s) Details


Os.36149.1.S1_x_at

Description gb:AK064368.1
DB_XREF= gi:32974386
TID=Os.36149.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.36149 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-108-C08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-108-C08, full insert sequence.
FL= gb:AK064368.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2308010/11expressed protein
LOC_Os06g371402/11expressed protein
LOC_Os11g202391/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g23050OsAffx.7175.1.S1_at11/1111+12774013..12776619hypothetical protein
LOC_Os11g23060OsAffx.25819.1.S1_at2/1111+12781345..12790668retrotransposon, putative, centromere-specific
LOC_Os11g23060OsAffx.13875.1.S1_at2/1111+12781345..12790668retrotransposon, putative, centromere-specific
LOC_Os11g23060OsAffx.25819.2.S1_at2/1111+12781345..12790668retrotransposon, putative, centromere-specific
LOC_Os11g23060OsAffx.25819.3.S1_at2/1111+12781345..12790668retrotransposon, putative, centromere-specific
LOC_Os11g23060OsAffx.25367.1.S1_at1/1111+12781345..12790668retrotransposon, putative, centromere-specific
LOC_Os11g23070OsAffx.31097.1.S1_at11/1111+12794607..12798961hypothetical protein
LOC_Os11g23070OsAffx.13875.1.S1_at2/1111+12794607..12798961hypothetical protein
LOC_Os11g23080Os.36149.1.S1_x_at10/1111+12800530..12802942expressed protein
LOC_Os11g23080Os.18078.1.S1_at3/1111+12800530..12802942expressed protein
LOC_Os11g23080Os.9016.1.S1_x_at1/1111+12800530..12802942expressed protein
LOC_Os11g23080Os.51412.1.S1_at1/1111+12800530..12802942expressed protein
LOC_Os11g23090OsAffx.10496.1.S1_at1/1111+12809369..12812299retrotransposon protein, putative, unclassified
LOC_Os11g23090OsAffx.20628.2.S1_x_at1/1111+12809369..12812299retrotransposon protein, putative, unclassified
LOC_Os11g23100OsAffx.22722.1.S1_at1/1111+12812756..12818749retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g23100OsAffx.1646.1.S1_x_at1/1111+12812756..12818749retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g23110NANA11+12822118..12823137hypothetical protein
LOC_Os11g23120Os.23706.1.A1_x_at1/1111+12826980..12828978retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.36149.1.S1_x_at--400--2472Chr11:12802663..12802687 (25 bp)
AACGGCCTCCCCAGGTGCGTGGTGC
LOC_Os11g23080
Os.36149.1.S1_x_at--575--4451Chr11:12802659..12802683 (25 bp)
GCCTCCCCAGGTGCGTGGTGCTAGG
LOC_Os11g23080
Os.36149.1.S1_x_at--201--7491Chr11:12802645..12802669 (25 bp)
GTGGTGCTAGGGAACACCACCCGCC
LOC_Os11g23080
Os.36149.1.S1_x_at--559--3752Chr11:12802568..12802592 (25 bp)
CTCTTCTCTGTTGCCGGCAAGAAAG
LOC_Os11g23080
Os.36149.1.S1_x_at--631--3873Chr11:12802561..12802585 (25 bp)
CTGTTGCCGGCAAGAAAGAGAAGAA
LOC_Os11g23080
Os.36149.1.S1_x_at--232--2371NONE
AAAGCCTGACAGAGTCTATTATCTT
NONE
Os.36149.1.S1_x_at--467--3671Chr11:12801745..12801769 (25 bp)
CTTTTGGATGGCAACTTGTGATGTT
LOC_Os11g23080
Os.36149.1.S1_x_at--312--8551Chr11:12801741..12801765 (25 bp)
TGGATGGCAACTTGTGATGTTTTGA
LOC_Os11g23080
Os.36149.1.S1_x_at--539--6811Chr11:12800667..12800691 (25 bp)
GTTTTCATTTCAATCTAGTTCTCAA
LOC_Os11g23080
Os.36149.1.S1_x_at--871--3652Chr06:17988889..17988913 (25 bp)
CTATAGCAATACACTAGAGTTGGTT
NONE
Os.36149.1.S1_x_at--703--10012Chr06:17988892..17988916 (25 bp)
TAGCAATACACTAGAGTTGGTTTAT
NONE
Target Sequence 
AACGGCCTCCCCAGGTGCGTGGTGCTAGGGAACACCACCCGCCGCCGGCGTCGCCGCCATCCAGCCACCGGAGCACCGGC
GCCCCACCTCCCTCCCTCTTCTCTGTTGCCGGCAAGAAAGAGAAGAAGAAAGGAACGGGAGGAAGAAGGAGAGAAGGAAA
AAGAAGAAGAAAAAGAAAAGCCTGACAGAGTCTATTATCTTTTGGATGGCAACTTGTGATGTTTTGAGGATCGGATAATT
AGGTTGCCTATCTTGGATTTGTTTGCGTTGGAGCAAGAGTTAATTTGGAGTTCTTGCCGAAGCCGAGAGTTCAATCATAT
AAGTTAGTTTTCATTTCAATCTAGTTCTCAAGTCTAGATTAGTTAGATGGTTTAAGTCTATAGCAATACACTAGAGTTGG
TTTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.36149.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis