Browse Element(s) Details


Os.51412.1.S1_at

Description gb:AK062736.1
DB_XREF= gi:32972754
TID=Os.51412.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.51412 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-106-E10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-106-E10, full insert sequence.
FL= gb:AK062736.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g230801/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g23050OsAffx.7175.1.S1_at11/1111+12774013..12776619hypothetical protein
LOC_Os11g23060OsAffx.25819.1.S1_at2/1111+12781345..12790668retrotransposon, putative, centromere-specific
LOC_Os11g23060OsAffx.13875.1.S1_at2/1111+12781345..12790668retrotransposon, putative, centromere-specific
LOC_Os11g23060OsAffx.25819.2.S1_at2/1111+12781345..12790668retrotransposon, putative, centromere-specific
LOC_Os11g23060OsAffx.25819.3.S1_at2/1111+12781345..12790668retrotransposon, putative, centromere-specific
LOC_Os11g23060OsAffx.25367.1.S1_at1/1111+12781345..12790668retrotransposon, putative, centromere-specific
LOC_Os11g23070OsAffx.31097.1.S1_at11/1111+12794607..12798961hypothetical protein
LOC_Os11g23070OsAffx.13875.1.S1_at2/1111+12794607..12798961hypothetical protein
LOC_Os11g23080Os.36149.1.S1_x_at10/1111+12800530..12802942expressed protein
LOC_Os11g23080Os.18078.1.S1_at3/1111+12800530..12802942expressed protein
LOC_Os11g23080Os.9016.1.S1_x_at1/1111+12800530..12802942expressed protein
LOC_Os11g23080Os.51412.1.S1_at1/1111+12800530..12802942expressed protein
LOC_Os11g23090OsAffx.10496.1.S1_at1/1111+12809369..12812299retrotransposon protein, putative, unclassified
LOC_Os11g23090OsAffx.20628.2.S1_x_at1/1111+12809369..12812299retrotransposon protein, putative, unclassified
LOC_Os11g23100OsAffx.22722.1.S1_at1/1111+12812756..12818749retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g23100OsAffx.1646.1.S1_x_at1/1111+12812756..12818749retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g23110NANA11+12822118..12823137hypothetical protein
LOC_Os11g23120Os.23706.1.A1_x_at1/1111+12826980..12828978retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51412.1.S1_at--772--1731Chr10:843124..843148 (25 bp)
ACCATCCTCGGATGCGCGTTGCGCG
NONE
Os.51412.1.S1_at--867--9431Chr10:843131..843155 (25 bp)
TCGGATGCGCGTTGCGCGGGAACAC
NONE
Os.51412.1.S1_at--413--9252Chr10:843206..843230 (25 bp)
TCCTCCCTGTTACTCGGCCAGAAGA
NONE
Os.51412.1.S1_at--152--3811Chr10:843208..843232 (25 bp)
CTCCCTGTTACTCGGCCAGAAGAGA
NONE
Os.51412.1.S1_at--359--8791Chr10:843213..843237 (25 bp)
TGTTACTCGGCCAGAAGAGAAGAGA
NONE
Os.51412.1.S1_at--981--7551NONE
GGGCCCATGAACAGGGTATTTTTGT
NONE
Os.51412.1.S1_at--541--4291Chr03:14545981..14546297 (25 bp)
CCATGAACAGGGTATTTTTGTCTTT
NONE
Os.51412.1.S1_at--554--3451NONE
CAGGGTATTTTTGTCTTTTCTAGAT
NONE
Os.51412.1.S1_at--15--100312Chr10:19542783..19542807 (25 bp)
TAGATTTAATTCAAAACCCAATCTT
NONE
Os.51412.1.S1_at--410--10194Chr10:843542..843566 (25 bp)
TATTTGCTTTTCGAATATTTCCGTT
NONE
Os.51412.1.S1_at--8--8833Chr10:843546..843570 (25 bp)
TGCTTTTCGAATATTTCCGTTTATT
NONE
Target Sequence 
ACCATCCTCGGATGCGCGTTGCGCGGGAACACGCGNTGGCCGCCGACTNTCNTCGATCCCCGGCCACCGGAGCCCCAGCA
CCCCTCCTCCCTGTTACTCGGCCAGAAGAGAAGAGAGAAGGAGATGACGGGAGGAAGAAGAAGGAAAAGAAAAAGAAAAA
GAAAGGCTGACAGGTGGGCCCATGAACAGGGTATTTTTGTCTTTTCTAGATTTAATTCAAAACCCAATCTTTAGAAGCCC
ATATCTCCTAAACCGTAGATCCGATTCCAGTGAAACTTGGACCTAAATTCATCTAAATTCAAAATCTACATTTTGGTACC
AAATTTGCTATTTTAATATTTTATTTAAATTTCCTTAATTTATTCAAATACCATGTGGATAAATATTTGATCTTATAATT
GAATTTACAATTTAAACTTATATTTGCTTTTCGAATATTTCCGTTTATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51412.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis