Browse Element(s) Details


Os.18078.1.S1_at

Description gb:C97547
DB_XREF= gi:3760291
DB_XREF=C97547
CLONE=C60356_8Z
TID=Os.18078.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.18078 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g230803/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g23050OsAffx.7175.1.S1_at11/1111+12774013..12776619hypothetical protein
LOC_Os11g23060OsAffx.25819.1.S1_at2/1111+12781345..12790668retrotransposon, putative, centromere-specific
LOC_Os11g23060OsAffx.13875.1.S1_at2/1111+12781345..12790668retrotransposon, putative, centromere-specific
LOC_Os11g23060OsAffx.25819.2.S1_at2/1111+12781345..12790668retrotransposon, putative, centromere-specific
LOC_Os11g23060OsAffx.25819.3.S1_at2/1111+12781345..12790668retrotransposon, putative, centromere-specific
LOC_Os11g23060OsAffx.25367.1.S1_at1/1111+12781345..12790668retrotransposon, putative, centromere-specific
LOC_Os11g23070OsAffx.31097.1.S1_at11/1111+12794607..12798961hypothetical protein
LOC_Os11g23070OsAffx.13875.1.S1_at2/1111+12794607..12798961hypothetical protein
LOC_Os11g23080Os.36149.1.S1_x_at10/1111+12800530..12802942expressed protein
LOC_Os11g23080Os.18078.1.S1_at3/1111+12800530..12802942expressed protein
LOC_Os11g23080Os.9016.1.S1_x_at1/1111+12800530..12802942expressed protein
LOC_Os11g23080Os.51412.1.S1_at1/1111+12800530..12802942expressed protein
LOC_Os11g23090OsAffx.10496.1.S1_at1/1111+12809369..12812299retrotransposon protein, putative, unclassified
LOC_Os11g23090OsAffx.20628.2.S1_x_at1/1111+12809369..12812299retrotransposon protein, putative, unclassified
LOC_Os11g23100OsAffx.22722.1.S1_at1/1111+12812756..12818749retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g23100OsAffx.1646.1.S1_x_at1/1111+12812756..12818749retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g23110NANA11+12822118..12823137hypothetical protein
LOC_Os11g23120Os.23706.1.A1_x_at1/1111+12826980..12828978retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18078.1.S1_at--151--4933Chr06:17988637..17988661 (25 bp)
GCATTTCAAAACATTATAGACTTTC
NONE
Os.18078.1.S1_at--757--9011Chr04:16243002..16243026 (25 bp)
TGCAATTAGATCTAGCTCTACTCAA
NONE
Os.18078.1.S1_at--974--131Chr04:16242998..16243022 (25 bp)
ATTAGATCTAGCTCTACTCAAATAC
NONE
Os.18078.1.S1_at--39--6434Chr10:19544400..19544424 (25 bp)
GATCTAGCTCTACTCAAATACTATT
NONE
Os.18078.1.S1_at--297--100111Chr10:19544404..19544428 (25 bp)
TAGCTCTACTCAAATACTATTATTT
NONE
Os.18078.1.S1_at--763--4171Chr04:16242903..16242927 (25 bp)
CCCTTCTTTCAGAATTAATTTGGAG
NONE
Os.18078.1.S1_at--1067--10251Chr04:16242712..16242736 (25 bp)
TTTGTAATAACAACTCCTCTAGAGC
NONE
Os.18078.1.S1_at--697--7051Chr04:16242709..16242733 (25 bp)
GTAATAACAACTCCTCTAGAGCCCT
NONE
Os.18078.1.S1_at--253--9751Chr04:16242708..16242732 (25 bp)
TAATAACAACTCCTCTAGAGCCCTG
NONE
Os.18078.1.S1_at--18--8651Chr04:16242581..16242605 (25 bp)
TGGGACCCGACATTTCGAATGAAAA
NONE
Os.18078.1.S1_at--303--8091Chr04:16242579..16242603 (25 bp)
GGACCCGACATTTCGAATGAAAAAG
NONE
Target Sequence 
GCATTTCAAAACATTATAGACTTTCNCCTTCTACTTTCTCAGCTTNCTGCAATTAGATCTAGCTCTACTCAAATACTATT
ATTTCATACATTCATACTTGAATATAATAACTTGCTGAGTACGTTGTACTCACCCTTGCTTTANCCCCCTTCTTTCAGAA
TTAATTTGGAGTNCTTGCCGAAGCCGAGAGTTCAATCATATAAGTTAGTTTCATTTCAACCTAGTTCTCAAGTCTAGATT
AGTTAGATGGNTTTAAGTCTATANCAAAACATTAGGATTGAGTCATTCTATAGCTTCTGCTGTATTANTTAGCCACAAGT
TTGTAAATACCCATATATTTTGTAATAACAACTCCTCTAGAGCCCTGNTCAAATGTATGCAATGAANAGCCAGATNGNTG
NANCTGNATCAATCTACTGATCCANGGCTTGNTACAGTCTAAACATGTCGGTTTCCGAATCATTAGTTTTGGGACCCGAC
ATTTCGAATGAAAAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18078.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis