Browse Element(s) Details


OsAffx.5093.1.S1_at

Description tigr:9634.m04194
TID=OsAffx.5093.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4344011/11Cytochrome P450 71D8, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g43384OsAffx.15908.5.S1_at11/116+26081409..26086094Cytochrome P450 family protein, expressed
LOC_Os06g43384OsAffx.15908.3.S1_at11/116+26081409..26086094Cytochrome P450 family protein, expressed
LOC_Os06g43400OsAffx.15908.4.S1_at11/116+26088783..26089887Cytochrome P450 71D7, putative
LOC_Os06g43400OsAffx.28078.1.S1_x_at1/116+26088783..26089887Cytochrome P450 71D7, putative
LOC_Os06g43400OsAffx.15908.1.S1_x_at1/116+26088783..26089887Cytochrome P450 71D7, putative
LOC_Os06g43410OsAffx.15908.1.S1_x_at11/116+26091519..26093624Cytochrome P450 family protein, expressed
LOC_Os06g43420OsAffx.15909.1.S1_at11/116+26096157..26097854Cytochrome P450 family protein, expressed
LOC_Os06g43430Os.22415.1.S1_s_at11/116+26104134..26106279Cytochrome P450 family protein, expressed
LOC_Os06g43430Os.8493.1.A1_at11/116+26104134..26106279Cytochrome P450 family protein, expressed
LOC_Os06g43440OsAffx.5093.1.S1_at11/116+26107629..26108557Cytochrome P450 71D8, putative, expressed
LOC_Os06g43450NANA6+26110126..26113417retrotransposon protein, putative, unclassified
LOC_Os06g43460NANA6+26114047..26120202retrotransposon protein, putative, unclassified
LOC_Os06g43470OsAffx.5094.1.S1_at11/116+26122170..26123153Cytochrome P450 71D10, putative

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5093.1.S1_at--1099--6931Chr06:26108074..26108098 (25 bp)
GTAGTCTGCATTACTTACACTTAGT
LOC_Os06g43440
OsAffx.5093.1.S1_at--720--2871Chr06:26108001..26108025 (25 bp)
AAGGGAATGTCGTGAACCATGCCAA
LOC_Os06g43440
OsAffx.5093.1.S1_at--413--7591Chr06:26107951..26107975 (25 bp)
GGGCTATGGTACTCATCAATGCATG
LOC_Os06g43440
OsAffx.5093.1.S1_at--1140--10071Chr06:26107917..26107941 (25 bp)
TAGGGACCCAAGCAACTGGCATGCA
LOC_Os06g43440
OsAffx.5093.1.S1_at--231--8111Chr06:26107808..26107832 (25 bp)
GGACGAAGAATCTGCCCAGGCATGA
LOC_Os06g43440
OsAffx.5093.1.S1_at--46--4351Chr06:26107793..26107817 (25 bp)
CCAGGCATGACGTTTAGGCTAGCAA
LOC_Os06g43440
OsAffx.5093.1.S1_at--260--3251Chr06:26107750..26107774 (25 bp)
CAAGCCTTCTGTATCACTTTGACTG
LOC_Os06g43440
OsAffx.5093.1.S1_at--739--271Chr06:26107716..26107740 (25 bp)
ATATGGGATGCAGGCAGGCGACCTC
LOC_Os06g43440
OsAffx.5093.1.S1_at--605--891Chr06:26107701..26107725 (25 bp)
AGGCGACCTCGATATGACTGAAACT
LOC_Os06g43440
OsAffx.5093.1.S1_at--980--5711Chr06:26107686..26107710 (25 bp)
GACTGAAACTCTGGCGGTTACCGCA
LOC_Os06g43440
OsAffx.5093.1.S1_at--1044--4591Chr06:26107659..26107683 (25 bp)
GCGAAAAGCCGACCTGTTGGTAGTT
LOC_Os06g43440
Target Sequence 
GTAGTCTGCATTACTTACACTTAGTCATCAAGGAGACGCTTCGGCTACACCCTCCAACGCCACTACTTCTACCAAGGGAA
TGTCGTGAACCATGCCAAATATTAGGATTCGACGTGTCTAAAGGGGCTATGGTACTCATCAATGCATGGTCTATTGGTAG
GGACCCAAGCAACTGGCATGCACCCGAAAAATTCATGCCAGAGAGGTTCGAGCAAAACAACATTGACTTTAAGGAAACAA
GCTTTGAGTACATACCTTTTGGAGCAGGACGAAGAATCTGCCCAGGCATGACGTTTAGGCTAGCAAACATCGAGCTTTTA
CTCGCAAGCCTTCTGTATCACTTTGACTGGGAGCTTCCATATGGGATGCAGGCAGGCGACCTCGATATGACTGAAACTCT
GGCGGTTACCGCACGGCGAAAAGCCGACCTGTTGGTAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5093.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis