Browse Element(s) Details


OsAffx.5164.1.S1_at

Description tigr:9634.m04997
TID=OsAffx.5164.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to photosystem ii stabilityassembly factor hcf136, chloroplastprecursor
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g513301/11BNR/Asp-box repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g51300NANA6+31062170..31062451hypothetical protein
LOC_Os06g51310Os.18590.1.S1_a_at11/116+31068078..31076380PINHEAD protein, putative, expressed
LOC_Os06g51320Os.21805.1.S1_s_at11/116+31081748..31082643Gibberellin regulated protein, expressed
LOC_Os06g51330OsAffx.5164.1.S1_at1/116+31082617..31092279BNR/Asp-box repeat family protein, expressed
LOC_Os06g51340OsAffx.29536.5.S1_x_at1/116+31096292..31098021retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g51340OsAffx.28971.1.S1_at1/116+31096292..31098021retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g51350OsAffx.5165.1.S1_at11/116+31099115..31101230tRNA isopentenyltransferase 9, putative, expressed
LOC_Os06g51360Os.7625.1.A1_s_at11/116+31104381..31106964LysM domain containing protein, expressed
LOC_Os06g51360OsAffx.28211.1.S1_at11/116+31104381..31106964LysM domain containing protein, expressed
LOC_Os06g51370OsAffx.28212.1.S1_at11/116+31108239..31110246Serine carboxypeptidase II precursor, putative

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Gene Ontology Classification
GO idTypeName
GO:0006461biological_processprotein complex assembly
GO:0009657biological_processplastid organization and biogenesis
GO:0009533cellular_componentchloroplast stromal thylakoid
GO:0009543cellular_componentthylakoid lumen (sensu Viridiplantae)
GO:0030095cellular_componentphotosystem II (sensu Viridiplantae)
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5164.1.S1_at--3--791Chr06:31082659..31082683 (25 bp)
ATGTGAGCATCTTCATCGTCAATGA
LOC_Os06g51330
OsAffx.5164.1.S1_at--323--751Chr06:31082602..31082626 (25 bp)
ATGTTTGTTTTATTCCTGGTGCTGG
NONE
OsAffx.5164.1.S1_at--764--411Chr06:31082387..31082411 (25 bp)
ATCATGGGCACTTGAGCTTGCCGTT
NONE
OsAffx.5164.1.S1_at--909--4911Chr06:31082372..31082396 (25 bp)
GCTTGCCGTTGTGTGGATTAACCAT
NONE
OsAffx.5164.1.S1_at--781--10491Chr06:31082355..31082379 (25 bp)
TTAACCATGGTGTCGTAGCAAGGGC
NONE
OsAffx.5164.1.S1_at--190--1851Chr06:31082295..31082319 (25 bp)
ACGCAGTTGCATCGGTTGCAGCAGA
NONE
OsAffx.5164.1.S1_at--832--5051Chr06:31082278..31082302 (25 bp)
GCAGCAGACGTTGCACATCTTGTTG
NONE
OsAffx.5164.1.S1_at--881--2092Chr02:3668291..3668319 (23 bp)
ACATCTCCTTCTTCCAGTTGTTGGC
NONE
OsAffx.5164.1.S1_at--107--7251Chr06:31082211..31082235 (25 bp)
GTCCCCTGGCAGTCTATACATTTAG
NONE
OsAffx.5164.1.S1_at--810--10211Chr06:31082170..31082194 (25 bp)
TATTAGTACAATTCCATCGCCTCTC
NONE
OsAffx.5164.1.S1_at--754--3771Chr06:31082145..31082169 (25 bp)
CTCTCCTGCCTGTAATGTATCATTT
NONE
Target Sequence 
ATGTGAGCATCTTCATCGTCAATGACAAGAAGAAAAGAAATAGAAGAGAATCATGATATGTTTGTTTTATTCCTGGTGCT
GGAGATTGAAGAAAGTAGAAAGGCATCTATTATATAGAGCAGTCCTATGTAGTAGCTAAGCTAGTAGTGACAGCCAGAGA
GATGTAGGGATTGAACATCAAGATGCATGGAACACATACGTACACATACTACCAAGTACATTGTACTCTGATCTCTCTGA
GAGCAATAGCAGCAGCTAATAGGAAGGAAGGAATCATGGGCACTTGAGCTTGCCGTTGTGTGGATTAACCATGGTGTCGT
AGCAAGGGCAGAGGTGGCGGGTGTCCTGCCCACTTCCCGGGGGAACGCAGTTGCATCGGTTGCAGCAGACGTTGCACATC
TTGTTGCACATCTCCTTCTTCCAGTTGTTGGCGCATCGCCCCGAGCACGTCCCCTGGCAGTCTATACATTTAGTGGTACC
ATTTTAATTTATTAGTACAATTCCATCGCCTCTCCTCTCCTGCCTGTAATGTATCATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5164.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis