Browse Element(s) Details


OsAffx.5206.1.S1_s_at

Description tigr:9635.m00366
TID=OsAffx.5206.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0435011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g04310NANA7+1901420..1903881hypothetical protein
LOC_Os07g04320OsAffx.28261.1.S1_at11/117+1904633..1905040hypothetical protein
LOC_Os07g04330Os.11006.1.S1_at10/117+1910380..1912548expressed protein
LOC_Os07g04330Os.38152.1.S1_at1/117+1910380..1912548expressed protein
LOC_Os07g04340Os.57039.1.S1_at11/117+1924015..1925341expressed protein
LOC_Os07g04350Os.40384.1.S1_at11/117+1926814..1928720expressed protein
LOC_Os07g04350OsAffx.5206.1.S1_s_at11/117+1926814..1928720expressed protein
LOC_Os07g04360Os.41695.4.S1_x_at2/117+1929721..1933659Transposable element protein, putative, MuDR
LOC_Os07g04370OsAffx.16079.1.S1_at11/117+1936167..1937694hypothetical protein
LOC_Os07g04380NANA7+1941686..1943505hypothetical protein
LOC_Os07g04390Os.50619.1.S1_at1/117+1944645..1950114hypothetical protein
LOC_Os07g04400OsAffx.5207.1.S1_at11/117+1950488..1951139hypothetical protein
LOC_Os07g04410NANA7+1951766..1952305Cytochrome P450 90D2, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5206.1.S1_s_at--498--7591Chr07:1927242..1927266 (25 bp)
GGGCAGCTATTTCAAAGACAATCAT
LOC_Os07g04350
OsAffx.5206.1.S1_s_at--333--5611Chr07:1927226..1927250 (25 bp)
GACAATCATCCGACTTTTGCTGAAT
LOC_Os07g04350
OsAffx.5206.1.S1_s_at--596--551Chr07:1927219..1927243 (25 bp)
ATCCGACTTTTGCTGAATTGGTTCA
LOC_Os07g04350
OsAffx.5206.1.S1_s_at--987--5191Chr07:1927205..1927229 (25 bp)
GAATTGGTTCAACGAGATACAGATC
LOC_Os07g04350
OsAffx.5206.1.S1_s_at--642--6471Chr07:1927190..1927214 (25 bp)
GATACAGATCGGAGGAGCTTCAACA
LOC_Os07g04350
OsAffx.5206.1.S1_s_at--991--491Chr07:1927183..1927207 (25 bp)
ATCGGAGGAGCTTCAACAGGATGTT
LOC_Os07g04350
OsAffx.5206.1.S1_s_at--806--1551Chr07:1927175..1927199 (25 bp)
AGCTTCAACAGGATGTTGGTGGCAG
LOC_Os07g04350
OsAffx.5206.1.S1_s_at--737--9071Chr07:1927146..1927170 (25 bp)
TGCTTCAGGCTATGCTGTTGCCCTT
LOC_Os07g04350
OsAffx.5206.1.S1_s_at--219--4751Chr07:1927133..1927157 (25 bp)
GCTGTTGCCCTTGTCATTATGTTAT
LOC_Os07g04350
OsAffx.5206.1.S1_s_at--618--10811Chr07:1927123..1927147 (25 bp)
TTGTCATTATGTTATCTCTTCGCCG
LOC_Os07g04350
OsAffx.5206.1.S1_s_at--1154--731Chr07:1927115..1927139 (25 bp)
ATGTTATCTCTTCGCCGTAGTGTGA
LOC_Os07g04350
Target Sequence 
GGGCAGCTATTTCAAAGACAATCATCCGACTTTTGCTGAATTGGTTCAACGAGATACAGATCGGAGGAGCTTCAACAGGA
TGTTGGTGGCAGGTGCTGCTTCAGGCTATGCTGTTGCCCTTGTCATTATGTTATCTCTTCGCCGTAGTGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5206.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis