Browse Element(s) Details


OsAffx.5207.1.S1_at

Description tigr:9635.m00371
TID=OsAffx.5207.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0440011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g04350Os.40384.1.S1_at11/117+1926814..1928720expressed protein
LOC_Os07g04350OsAffx.5206.1.S1_s_at11/117+1926814..1928720expressed protein
LOC_Os07g04360Os.41695.4.S1_x_at2/117+1929721..1933659Transposable element protein, putative, MuDR
LOC_Os07g04370OsAffx.16079.1.S1_at11/117+1936167..1937694hypothetical protein
LOC_Os07g04380NANA7+1941686..1943505hypothetical protein
LOC_Os07g04390Os.50619.1.S1_at1/117+1944645..1950114hypothetical protein
LOC_Os07g04400OsAffx.5207.1.S1_at11/117+1950488..1951139hypothetical protein
LOC_Os07g04410NANA7+1951766..1952305Cytochrome P450 90D2, putative
LOC_Os07g04420Os.54102.1.S1_x_at9/117+1954422..1957966hypothetical protein
LOC_Os07g04420Os.53654.1.S1_at3/117+1954422..1957966hypothetical protein
LOC_Os07g04420Os.27698.1.A1_x_at1/117+1954422..1957966hypothetical protein
LOC_Os07g04430NANA7+1958813..1962780expressed protein
LOC_Os07g04440Os.49250.1.S1_at8/117+1963593..1964641expressed protein
LOC_Os07g04450Os.16140.1.S1_at10/117+1968074..1970246expressed protein
LOC_Os07g04460NANA7+1972628..1972867hypothetical protein
LOC_Os07g04470OsAffx.16080.1.S1_at10/117+1974591..1975788GRF zinc finger family protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5207.1.S1_at--608--3671Chr07:1950729..1950753 (25 bp)
CTTATTGTGTTGTCATCAAGCTGAA
LOC_Os07g04400
OsAffx.5207.1.S1_at--405--2431Chr07:1950705..1950729 (25 bp)
AAAATTTTCATGTAAGAGGTTTCAG
LOC_Os07g04400
OsAffx.5207.1.S1_at--888--6153Chr01:42994978..42995003 (25 bp)
GAGGTTTCAGGTTACAGGCTTACTT
NONE
OsAffx.5207.1.S1_at--271--6773Chr01:42994991..42995013 (23 bp)
GTTACAGGCTTACTTCCAGTTGGTG
NONE
OsAffx.5207.1.S1_at--85--9892Chr01:42994999..42995023 (25 bp)
TACTTCCAGTTGGTGAAGGGCGAGA
NONE
OsAffx.5207.1.S1_at--24--2071Chr07:1950629..1950653 (25 bp)
ACTTGACGGTGAGCGTGATGAGAAC
LOC_Os07g04400
OsAffx.5207.1.S1_at--293--10172Chr01:42995085..42995108 (24 bp)
TATCATGAGGTCGATCATGGTGTCG
NONE
OsAffx.5207.1.S1_at--676--411Chr07:1950570..1950594 (25 bp)
ATCATGGTGTCGGAGATGAGCTCGT
LOC_Os07g04400
OsAffx.5207.1.S1_at--902--692Chr07:1950555..1950579 (25 bp)
ATGAGCTCGTCGGTGAGCTCATCGC
LOC_Os07g04400
OsAffx.5207.1.S1_at--1088--1571Chr07:1950540..1950564 (25 bp)
AGCTCATCGCTGGTGTCTCTGAAGA
LOC_Os07g04400
OsAffx.5207.1.S1_at--762--3831Chr07:1950522..1950546 (25 bp)
CTGAAGAGAACGTCGATGGCGTCCC
LOC_Os07g04400
Target Sequence 
CTTATTGTGTTGTCATCAAGCTGAAAAATTTTCATGTAAGAGGTTTCAGGTTACAGGCTTACTTCCAGTTGGTGAAGGGC
GAGAAGGCACTCGCTGAGGAACTTGACGGTGAGCGTGATGAGAACCGGGACGGAGTCCCCGGCGGGTATCATGAGGTCGA
TCATGGTGTCGGAGATGAGCTCGTCGGTGAGCTCATCGCTGGTGTCTCTGAAGAGAACGTCGATGGCGTCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5207.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis