Browse Element(s) Details


OsAffx.5252.1.S1_at

Description tigr:9635.m00773
TID=OsAffx.5252.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0823011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g08190Os.14272.1.A1_at11/117+4173780..4179946peptidyl-prolyl cis-trans isomerase, cyclophilin-type family protein, expressed
LOC_Os07g08200OsAffx.16151.1.S1_at11/117+4180344..418234837 kDa inner envelope membrane protein, chloroplast precursor, putative, expressed
LOC_Os07g08210Os.19026.1.S1_at11/117+4183505..4186325Cytidylyltransferase family protein, expressed
LOC_Os07g08220OsAffx.16152.1.S1_at11/117+4189376..4193389expressed protein
LOC_Os07g08230OsAffx.5252.1.S1_at11/117+4194715..4195365hypothetical protein
LOC_Os07g08240Os.18977.1.S1_at11/117+4197562..4199468ZmEBE-1 protein, putative, expressed
LOC_Os07g08250NANA7+4205285..4205608hypothetical protein
LOC_Os07g08260OsAffx.5254.1.S1_at11/117+4210867..4211387hypothetical protein
LOC_Os07g08270OsAffx.28341.1.S1_at11/117+4218235..4220121hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5252.1.S1_at--485--271Chr07:4194747..4194771 (25 bp)
ATATGGAAGTGGACACCGTGGTGTC
LOC_Os07g08230
OsAffx.5252.1.S1_at--1066--7511Chr07:4194755..4194779 (25 bp)
GTGGACACCGTGGTGTCTATGGCTT
LOC_Os07g08230
OsAffx.5252.1.S1_at--550--8291Chr07:4194775..4194799 (25 bp)
GGCTTCCATAGGCATTATCGTGACG
LOC_Os07g08230
OsAffx.5252.1.S1_at--683--8931Chr07:4194795..4194819 (25 bp)
TGACGGTTGGAGAGGTGATCACCAT
LOC_Os07g08230
OsAffx.5252.1.S1_at--667--4991Chr07:4194825..4194849 (25 bp)
GCATGGACAGGAACACATCATCTCT
LOC_Os07g08230
OsAffx.5252.1.S1_at--482--4411Chr07:4194876..4194900 (25 bp)
GCCACCACATTATCCTTTGTCGGAG
LOC_Os07g08230
OsAffx.5252.1.S1_at--336--10151Chr07:4194886..4194910 (25 bp)
TATCCTTTGTCGGAGTTTCTGCCGC
LOC_Os07g08230
OsAffx.5252.1.S1_at--496--9451Chr07:4194920..4194944 (25 bp)
TCGGCGCATACCATGAACCAACTAT
LOC_Os07g08230
OsAffx.5252.1.S1_at--387--8991Chr07:4194933..4194957 (25 bp)
TGAACCAACTATCGGATACGCACCC
LOC_Os07g08230
OsAffx.5252.1.S1_at--712--5091Chr07:4194952..4194976 (25 bp)
GCACCCCACAGCGAATACTATGGAT
LOC_Os07g08230
OsAffx.5252.1.S1_at--757--5231Chr07:4194964..4194988 (25 bp)
GAATACTATGGATCAATGGTCAGCC
LOC_Os07g08230
Target Sequence 
ATATGGAAGTGGACACCGTGGTGTCTATGGCTTCCATAGGCATTATCGTGACGGTTGGAGAGGTGATCACCATGGTGGGC
ATGGACAGGAACACATCATCTCTCACATTGGTTTCCTCCCGCCGCTGCCGCCACCACATTATCCTTTGTCGGAGTTTCTG
CCGCCGCCGTACTTCGGCGCATACCATGAACCAACTATCGGATACGCACCCCACAGCGAATACTATGGATCAATGGTCAG
CC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5252.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis