Browse Element(s) Details


OsAffx.5269.1.S1_at

Description tigr:9635.m00934
TID=OsAffx.5269.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0970010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g09680Os.12074.1.S1_at11/117+5143385..5147047Ras-related protein ARA-3, putative, expressed
LOC_Os07g09680Os.12233.2.S1_x_at1/117+5143385..5147047Ras-related protein ARA-3, putative, expressed
LOC_Os07g09690Os.23410.1.A1_at11/117+5149666..5153837galactosyltransferase family protein, putative, expressed
LOC_Os07g09690Os.57159.1.S1_x_at1/117+5149666..5153837galactosyltransferase family protein, putative, expressed
LOC_Os07g09700OsAffx.5269.1.S1_at10/117+5160577..5161802hypothetical protein
LOC_Os07g09710OsAffx.5270.1.S1_at11/117+5163173..5165015F-box domain containing protein, expressed
LOC_Os07g09710Os.48723.1.A1_at8/117+5163173..5165015F-box domain containing protein, expressed
LOC_Os07g09720Os.5949.1.S1_at11/117+5177408..5181052Phosphoglucomutase/phosphomannomutase, C-terminal domain containing protein, expressed
LOC_Os07g09730NANA7+5185068..5186255hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5269.1.S1_at--141--5591NONE
GACACAGTTACAAAGGTGGAAGCTC
NONE
OsAffx.5269.1.S1_at--384--8191Chr07:5161584..5161608 (25 bp)
GGAAGCTCTGAAGTCGTATCAGGTA
LOC_Os07g09700
OsAffx.5269.1.S1_at--239--5331Chr07:5161593..5161617 (25 bp)
GAAGTCGTATCAGGTAATCCTAACG
LOC_Os07g09700
OsAffx.5269.1.S1_at--652--7831Chr07:5161605..5161629 (25 bp)
GGTAATCCTAACGATGAATTATTGA
LOC_Os07g09700
OsAffx.5269.1.S1_at--297--5211Chr07:5161620..5161644 (25 bp)
GAATTATTGACTGAAACTGACAAGA
LOC_Os07g09700
OsAffx.5269.1.S1_at--612--931Chr07:5161651..5161675 (25 bp)
AGGAAGGGAACAGCTTGCAAGTTGC
LOC_Os07g09700
OsAffx.5269.1.S1_at--389--9011Chr07:5161666..5161690 (25 bp)
TGCAAGTTGCAAGCGCGAAGGCGAC
LOC_Os07g09700
OsAffx.5269.1.S1_at--620--4091Chr07:5161681..5161705 (25 bp)
CGAAGGCGACTACGATCACCTCACA
LOC_Os07g09700
OsAffx.5269.1.S1_at--1083--9691Chr07:5161701..5161725 (25 bp)
TCACACCAGCCGAGAGGCGTTTACA
LOC_Os07g09700
OsAffx.5269.1.S1_at--887--3371Chr07:5161707..5161731 (25 bp)
CAGCCGAGAGGCGTTTACATGGAGC
LOC_Os07g09700
OsAffx.5269.1.S1_at--577--1291Chr07:5161738..5161762 (25 bp)
AGATGATTGATAAACACAAGTGGCC
LOC_Os07g09700
Target Sequence 
GACACAGTTACAAAGGTGGAAGCTCTGAAGTCGTATCAGGTAATCCTAACGATGAATTATTGACTGAAACTGACAAGATG
GGAGAGGAAGGGAACAGCTTGCAAGTTGCAAGCGCGAAGGCGACTACGATCACCTCACACCAGCCGAGAGGCGTTTACAT
GGAGCAGAAGCAGATGATTGATAAACACAAGTGGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5269.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis