Browse Element(s) Details


OsAffx.5284.1.S1_at

Description tigr:9635.m01026
TID=OsAffx.5284.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=contains similarity to sugar transporters
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g337501/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g33700Os.40360.1.S1_x_at1/111+18875724..18881551hypothetical protein
LOC_Os01g33710Os.54194.1.S1_at11/111+18882549..18883659expressed protein
LOC_Os01g33720OsAffx.2145.1.S1_at11/111+18885871..18886444hypothetical protein
LOC_Os01g33730NANA1+18887292..18888959retrotransposon protein, putative, unclassified
LOC_Os01g33740NANA1+18892531..18898374retrotransposon protein, putative, unclassified
LOC_Os01g33750OsAffx.5284.1.S1_at1/111+18900988..18906693retrotransposon protein, putative, unclassified
LOC_Os01g33760OsAffx.23494.1.S1_at10/111+18908869..18910085hypothetical protein
LOC_Os01g33770OsAffx.23495.2.S1_s_at11/111+18916513..18917154hypothetical protein
LOC_Os01g33770OsAffx.23495.2.S1_at11/111+18916513..18917154hypothetical protein
LOC_Os01g33784Os.17777.1.S1_x_at11/111+18920136..18924789lipase family protein, putative, expressed
LOC_Os01g33784Os.17777.2.S1_at11/111+18920136..18924789lipase family protein, putative, expressed
LOC_Os01g33784Os.17777.1.S1_at11/111+18920136..18924789lipase family protein, putative, expressed
LOC_Os01g33784Os.17777.2.S1_x_at11/111+18920136..18924789lipase family protein, putative, expressed
LOC_Os01g33800Os.7307.2.S1_s_at11/111+18927872..18938409DnaJ domain containing protein, expressed
LOC_Os01g33800Os.7307.1.S1_at11/111+18927872..18938409DnaJ domain containing protein, expressed
LOC_Os01g33800Os.7307.1.S1_a_at11/111+18927872..18938409DnaJ domain containing protein, expressed
LOC_Os01g33800Os.7307.2.S1_x_at10/111+18927872..18938409DnaJ domain containing protein, expressed
LOC_Os01g33800OsAffx.11306.1.S1_at1/111+18927872..18938409DnaJ domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5284.1.S1_at--837--5971Chr07:5743739..5743763 (25 bp)
GAGAAACGGACGGTGATCGCTCCAT
NONE
OsAffx.5284.1.S1_at--383--8551Chr07:5743701..5743725 (25 bp)
TGGAGTACACCTGTGCCACCAAAGG
NONE
OsAffx.5284.1.S1_at--33--3292Chr01:18905702..18905726 (25 bp)
CAAAGGTCCGTATTTTCGCCTGGCG
LOC_Os01g33750
OsAffx.5284.1.S1_at--945--2711Chr07:5743604..5743628 (25 bp)
AAGCAGTTGCGACCTGTACTATCTG
NONE
OsAffx.5284.1.S1_at--312--8191Chr07:5743567..5743591 (25 bp)
GGAAGACGAGTTTCACGCGGTGATT
NONE
OsAffx.5284.1.S1_at--770--7391Chr07:5743548..5743572 (25 bp)
GTGATTTCATGTACCCGGCCAAGGG
NONE
OsAffx.5284.1.S1_at--40--351Chr07:5743484..5743508 (25 bp)
ATAAGCGTTCCCTGTCGAAGCTAGG
NONE
OsAffx.5284.1.S1_at--268--10111Chr07:5743391..5743415 (25 bp)
TATGGCGAGCTTGGTACCTGCGTAA
NONE
OsAffx.5284.1.S1_at--111--3011Chr07:5743368..5743392 (25 bp)
AATGACTGTGTCTTCGGTTCTGGGC
NONE
OsAffx.5284.1.S1_at--140--9491Chr07:5743326..5743350 (25 bp)
TCTGCATCTTTCCTTCTGAATCTAT
NONE
OsAffx.5284.1.S1_at--614--3051Chr07:5743308..5743332 (25 bp)
AATCTATGGAATTCCTTGTGCCCGT
NONE
Target Sequence 
GAGAAACGGACGGTGATCGCTCCATCTGGCGAAGAATTTGGAGTACACCTGTGCCACCAAAGGTCCGTATTTTCGCCTGG
CGTCTAGCCCGAAATTATCTGGCTACCCAGAAGAACAGGTGTAAACGAAAGCTGCAAGCAGTTGCGACCTGTACTATCTG
CGGCCAGGGGGAGGAAGACGAGTTTCACGCGGTGATTTCATGTACCCGGCCAAGGGCCCTCCGTGAAACTCTGCGGGCGA
GCTGGAGGTTACCGGATAAGCGTTCCCTGTCGAAGCTAGGCCCAGGGTGGCTTCTTGGGGGACTCGATAAGCTGAGCGAA
AACGAGCGGGCGCAGTTTCTCCTTGTCCTATGGCGAGCTTGGTACCTGCGTAATGACTGTGTCTTCGGTTCTGGGCAAGC
GACGGTAAAGGGCTCTGCATCTTTCCTTCTGAATCTATGGAATTCCTTGTGCCCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5284.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis