Browse Element(s) Details


OsAffx.5285.1.S1_x_at

Description tigr:9635.m01029
TID=OsAffx.5285.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1062011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g10590Os.50123.1.S1_x_at11/117+5745694..5748126Sugar transporter family protein, expressed
LOC_Os07g10600Os.2224.1.S1_a_at11/117+5749185..5755006Cycloartenol-C-24-methyltransferase 1, putative, expressed
LOC_Os07g10610NANA7+5765881..5766816expressed protein
LOC_Os07g10620Os.55266.1.S1_at11/117+5767849..5769747expressed protein
LOC_Os07g10620OsAffx.5285.1.S1_at11/117+5767849..5769747expressed protein
LOC_Os07g10620OsAffx.5285.1.S1_x_at11/117+5767849..5769747expressed protein
LOC_Os07g10630Os.47755.1.S1_at11/117+5772256..5775785leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os07g10630Os.27728.1.S1_at1/117+5772256..5775785leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os07g10640OsAffx.28389.1.S1_at11/117+5778285..5779098expressed protein
LOC_Os07g10650OsAffx.5286.1.S1_at11/117+5784632..5784928hypothetical protein
LOC_Os07g10660Os.16825.1.S1_at11/117+5785515..578752340S ribosomal protein S2, putative, expressed
LOC_Os07g10660OsAffx.5287.1.S1_s_at11/117+5785515..578752340S ribosomal protein S2, putative, expressed
LOC_Os07g10670OsAffx.16198.1.S1_at11/117+5793684..5794307hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5285.1.S1_x_at--704--3651Chr07:5768811..5768835 (25 bp)
CTTCAAGGAGCTCCCGGCGCCAATG
LOC_Os07g10620
OsAffx.5285.1.S1_x_at--637--4391Chr07:5768829..5768933 (25 bp)
GCCAATGCCATCCAAAGACAACCTG
LOC_Os07g10620
OsAffx.5285.1.S1_x_at--457--2711Chr07:5768924..5768947 (24 bp)
AAGACAACCTGATCCGGAACGGCGA
LOC_Os07g10620
OsAffx.5285.1.S1_x_at--748--1751Chr07:5768929..5768953 (25 bp)
ACCTGATCCGGAACGGCGACTTCGA
LOC_Os07g10620
OsAffx.5285.1.S1_x_at--965--551Chr07:5768934..5768958 (25 bp)
ATCCGGAACGGCGACTTCGAGGCCG
LOC_Os07g10620
OsAffx.5285.1.S1_x_at--159--7731Chr07:5769037..5769061 (25 bp)
GGTGGATCGTCGAGTCGCTCCGCCC
LOC_Os07g10620
OsAffx.5285.1.S1_x_at--995--3511Chr07:5769230..5769254 (25 bp)
CATGCTGGTGCACGCCGTCGTCGTC
LOC_Os07g10620
OsAffx.5285.1.S1_x_at--61--4351Chr07:5769331..5769355 (25 bp)
CCAGGCAGGCCAGCCTGAGGTTCGT
LOC_Os07g10620
OsAffx.5285.1.S1_x_at--408--3931Chr07:5769366..5769390 (25 bp)
CGGCGCGCCAGGGTGACGTTCTACA
LOC_Os07g10620
OsAffx.5285.1.S1_x_at--307--4411Chr07:5769372..5769396 (25 bp)
GCCAGGGTGACGTTCTACAGCTCCT
LOC_Os07g10620
OsAffx.5285.1.S1_x_at--487--7211Chr07:5769431..5769455 (25 bp)
GTGCGGGCCGGTGCTGGACCAGGTG
LOC_Os07g10620
Target Sequence 
CTTCAAGGAGCTCCCGGCGCCAATGCCATCCAAAGACAACCTGATCCGGAACGGCGACTTCGAGGCCGGGCCGGCGGCGA
TCCCGAACTCCACCGCCGGCGTGCTGCTGCCGCCGAAGCGGAAGGACGCGACGTCGCCGCTGCCGGGGTGGATCGTCGAG
TCGCTCCGCCCCGTCCGCCTCGTCGACGCGCCGCACTTCGCGGTGCCGCAGGGGCAGCGCGCCGTGGAGCTCGTCGCCGG
GCGGGAGGGCGCGGTCGCGCAGGTGATCCGCACCGCACCGGGCCGCTCGTACAACCTCTCCTTCGCCGTCGGCGACGCCA
GGGACGGCTGCGAGGGCGCCATGCTGGTGCACGCCGTCGTCGTCGCCGGCGGCGGCGGCAACGCGACGGCGAAGGCGGCG
GCGGCGGCCGTGCCCTACGCGTCGCGCGGCGGCGGCGGCGCCAGGCAGGCCAGCCTGAGGTTCGTGGCGAGCGGGCGGCG
CGCCAGGGTGACGTTCTACAGCTCCTACTACCACACCAGCGCCGGCGACGGCGTGTCGCCGTGCGGGCCGGTGCTGGACC
AGGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5285.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis