Browse Element(s) Details


OsAffx.5289.1.S1_at

Description tigr:9635.m01068
TID=OsAffx.5289.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1096011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g10940OsAffx.28398.1.S1_at11/117+5986157..5995495Exo70 exocyst complex subunit family protein
LOC_Os07g10940Os.54910.1.S1_at1/117+5986157..5995495Exo70 exocyst complex subunit family protein
LOC_Os07g10950OsAffx.617.1.A1_at11/117+5998924..6002836hypothetical protein
LOC_Os07g10950OsAffx.617.1.A1_x_at11/117+5998924..6002836hypothetical protein
LOC_Os07g10950OsAffx.27854.1.S1_at1/117+5998924..6002836hypothetical protein
LOC_Os07g10960OsAffx.5289.1.S1_at11/117+6013523..6015699expressed protein
LOC_Os07g10970OsAffx.5290.1.S1_at11/117+6017150..6019452expressed protein
LOC_Os07g10979NANA7+6026296..6026941NA
LOC_Os07g10990OsAffx.16205.1.S1_at11/117+6031397..6032250hypothetical protein
LOC_Os07g11000Os.50928.1.S1_at11/117+6034377..6042702expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006904biological_processvesicle docking during exocytosis
GO:0000145cellular_componentexocyst
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5289.1.S1_at--249--5251Chr07:6015139..6015163 (25 bp)
GAATCCTTTACTGGTGAGCTTCACA
LOC_Os07g10960
OsAffx.5289.1.S1_at--196--10511Chr07:6015158..6015182 (25 bp)
TTCACAAAATTCTTCACACCCTAAA
LOC_Os07g10960
OsAffx.5289.1.S1_at--815--6211Chr07:6015257..6015281 (25 bp)
GAGGCGGCATACATTTGGTCACAAC
LOC_Os07g10960
OsAffx.5289.1.S1_at--724--8591Chr07:6015272..6015296 (25 bp)
TGGTCACAACTTACCTCATCAGATA
LOC_Os07g10960
OsAffx.5289.1.S1_at--455--2131Chr07:6015319..6015343 (25 bp)
ACAGGTTCACTGGATGCAATTCTTG
LOC_Os07g10960
OsAffx.5289.1.S1_at--1--5211Chr07:6015334..6015358 (25 bp)
GCAATTCTTGCTCACAGTTACGAAG
LOC_Os07g10960
OsAffx.5289.1.S1_at--319--1191Chr07:6015349..6015373 (25 bp)
AGTTACGAAGACCATGCATTAGCAG
LOC_Os07g10960
OsAffx.5289.1.S1_at--1091--8831Chr07:6015423..6015447 (25 bp)
TGATCTTACATCCATGCTCTACAGG
LOC_Os07g10960
OsAffx.5289.1.S1_at--907--7871Chr07:6015478..6015502 (25 bp)
GGTTTACAATGGTTATTCCTTCTGA
LOC_Os07g10960
OsAffx.5289.1.S1_at--146--7811Chr07:6015548..6015572 (25 bp)
GGTCGATGCTACCAGCTGATTGGAT
LOC_Os07g10960
OsAffx.5289.1.S1_at--432--9471Chr07:6015633..6015657 (25 bp)
TCTGACCCTGTCTTATCTGAAGAAA
LOC_Os07g10960
Target Sequence 
GAATCCTTTACTGGTGAGCTTCACAAAATTCTTCACACCCTAAAAGATGGTACAAAAGAAACACTTGATCAGTTAAGAGT
CCAAATTCAGTCATATAGTTCAGAAGACATGCCAGAGGGAGGCGGCATACATTTGGTCACAACTTACCTCATCAGATATA
TCATGTCACTAACACAAAACACAGGTTCACTGGATGCAATTCTTGCTCACAGTTACGAAGACCATGCATTAGCAGAAGAG
AGGATGATGAACACATCAGGTCACCTGATATCTATGCTGATATCTGATCTTACATCCATGCTCTACAGGCTGTCTAAGTT
GTACATGTCTAAATCTGAAGGTTTACAATGGTTATTCCTTCTGAACAATGAGCATTTCATACTTCGGAAAATTGAAGAAG
CAGATATAAGGTCGATGCTACCAGCTGATTGGATTCAAAATTACCAGCACAGAGTCGAGCAGAACAAAGTGAATTATATA
GAAGCAACATGGGCTCTGACCCTGTCTTATCTGAAGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5289.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis