Browse Element(s) Details


OsAffx.5388.1.S1_at

Description tigr:9635.m02030
TID=OsAffx.5388.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2060011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g20570OsAffx.5387.1.S1_at9/117+11883225..11884009hypothetical protein
LOC_Os07g20580Os.54215.1.S1_x_at10/117+11885483..11892727ATP-dependent RNA helicase DBP3, putative, expressed
LOC_Os07g20580OsAffx.31822.1.S1_at1/117+11885483..11892727ATP-dependent RNA helicase DBP3, putative, expressed
LOC_Os07g20590OsAffx.16347.1.S1_at11/117+11901758..11902253hypothetical protein
LOC_Os07g20600OsAffx.5388.1.S1_at11/117+11907024..11907524expressed protein
LOC_Os07g20610OsAffx.28531.1.S1_at11/117+11908142..11911997Protein kinase domain containing protein
LOC_Os07g20620NANA7+11915391..11919047retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g20630OsAffx.25367.1.S1_at1/117+11920431..11925106retrotransposon, putative, centromere-specific
LOC_Os07g20640NANA7+11925564..11925805hypothetical protein
LOC_Os07g20650NANA7+11930088..11930342hypothetical protein
LOC_Os07g20660NANA7+11931989..11934989hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5388.1.S1_at--241--10551Chr07:11907468..11907492 (25 bp)
TTCATCGTGTCGGTTCGTCCTCGAG
LOC_Os07g20600
OsAffx.5388.1.S1_at--931--5891Chr07:11907446..11907470 (25 bp)
GAGCTCGATCCTCTCTTGAAGATGC
LOC_Os07g20600
OsAffx.5388.1.S1_at--146--2811Chr07:11907428..11907452 (25 bp)
AAGATGCCCGAGAATCATTTCTTCA
LOC_Os07g20600
OsAffx.5388.1.S1_at--449--5251Chr07:11907417..11907441 (25 bp)
GAATCATTTCTTCATGGCTACAACA
LOC_Os07g20600
OsAffx.5388.1.S1_at--216--5171Chr07:11907388..11907412 (25 bp)
GCAAGGGTACAAGACTACTCGAGCG
LOC_Os07g20600
OsAffx.5388.1.S1_at--501--351Chr07:11907158..11907182 (25 bp)
ATAACGGCCATTTATGACATGTGGG
LOC_Os07g20600
OsAffx.5388.1.S1_at--570--3491Chr07:11907141..11907165 (25 bp)
CATGTGGGACACAAAAACCGTTGCA
LOC_Os07g20600
OsAffx.5388.1.S1_at--564--7611Chr07:11907136..11907160 (25 bp)
GGGACACAAAAACCGTTGCACCACA
LOC_Os07g20600
OsAffx.5388.1.S1_at--406--6671Chr07:11907122..11907146 (25 bp)
GTTGCACCACAAAAGGACAGGCCCA
LOC_Os07g20600
OsAffx.5388.1.S1_at--35--3891Chr07:11907085..11907109 (25 bp)
CTGGGTTAGCCAACCTCTTGGTGGG
LOC_Os07g20600
OsAffx.5388.1.S1_at--142--3731Chr07:11907058..11907082 (25 bp)
CTACTGGCCCAGGATTTCGTGGTGT
LOC_Os07g20600
Target Sequence 
TTCATCGTGTCGGTTCGTCCTCGAGCTCGATCCTCTCTTGAAGATGCCCGAGAATCATTTCTTCATGGCTACAACAAAGA
GCAAGGGTACAAGACTACTCGAGCGGGGAGGGGCCATAACGGCCATTTATGACATGTGGGACACAAAAACCGTTGCACCA
CAAAAGGACAGGCCCAACGGCCACCTTCCTGGGTTAGCCAACCTCTTGGTGGGGCCTACTGGCCCAGGATTTCGTGGTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5388.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis