Browse Element(s) Details


OsAffx.5408.1.S1_at

Description tigr:9635.m02156
TID=OsAffx.5408.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2276011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g22720Os.10904.1.S1_at11/117+12810016..12817702pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase family protein, expressed
LOC_Os07g22720Os.14834.1.S1_at1/117+12810016..12817702pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase family protein, expressed
LOC_Os07g22730Os.30670.2.S1_x_at11/117+12824854..12825519AP2 domain containing protein
LOC_Os07g22740NANA7+12833220..12834899Transposable element protein, putative, Retrotrans_gag
LOC_Os07g22750NANA7+12835029..12836955retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g22760OsAffx.5408.1.S1_at11/117+12841691..12842291hypothetical protein
LOC_Os07g22770Os.36817.1.S1_at11/117+12845239..12846716AP2 domain containing protein, expressed
LOC_Os07g22784NANA7+12859119..12859264NA
LOC_Os07g22800NANA7+12862728..12864535retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g22810OsAffx.19542.3.S1_x_at2/117+12865619..12866554retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5408.1.S1_at--729--7251Chr07:12842223..12842247 (25 bp)
GTCCTTCCAAGCTAGCGACGGGCAA
LOC_Os07g22760
OsAffx.5408.1.S1_at--259--5331Chr07:12842162..12842186 (25 bp)
GAAGTAATTTTTGCAGCGTCTGGAT
LOC_Os07g22760
OsAffx.5408.1.S1_at--17--9471Chr07:12842144..12842168 (25 bp)
TCTGGATTTGTGGATCGCTACGGCA
LOC_Os07g22760
OsAffx.5408.1.S1_at--996--511Chr07:12842131..12842155 (25 bp)
ATCGCTACGGCAGTGCGCTGGAAGC
LOC_Os07g22760
OsAffx.5408.1.S1_at--827--1311Chr07:12842088..12842112 (25 bp)
AGATGGGCTTTCCTTGGCGCTACAA
LOC_Os07g22760
OsAffx.5408.1.S1_at--441--2971Chr07:12842065..12842089 (25 bp)
AATGGACTCTTCTTCCGATTGTCGT
LOC_Os07g22760
OsAffx.5408.1.S1_at--304--2151Chr07:12842036..12842060 (25 bp)
ACAGACAGTCTGATGGCGAAGCAAC
LOC_Os07g22760
OsAffx.5408.1.S1_at--1105--4571Chr07:12842021..12842045 (25 bp)
GCGAAGCAACTTGTTCAGTCCGATT
LOC_Os07g22760
OsAffx.5408.1.S1_at--209--9651Chr07:12842007..12842031 (25 bp)
TCAGTCCGATTCAATGGTGCGTTCA
LOC_Os07g22760
OsAffx.5408.1.S1_at--278--7791Chr07:12841992..12842016 (25 bp)
GGTGCGTTCAGACATGGTGTTCTTA
LOC_Os07g22760
OsAffx.5408.1.S1_at--1095--10052Chr07:12841969..12841993 (25 bp)
TAGTCAGGGAGGTTCGTGACCTCTT
LOC_Os07g22760
Target Sequence 
GTCCTTCCAAGCTAGCGACGGGCAAGGAGGAATCGGTGCAGTACTGCGGAACGCGGAAGGAGAAGTAATTTTTGCAGCGT
CTGGATTTGTGGATCGCTACGGCAGTGCGCTGGAAGCTGAACTCCTCTCTTGCAGAGATGGGCTTTCCTTGGCGCTACAA
TGGACTCTTCTTCCGATTGTCGTAGAGACAGACAGTCTGATGGCGAAGCAACTTGTTCAGTCCGATTCAATGGTGCGTTC
AGACATGGTGTTCTTAGTCAGGGAGGTTCGTGACCTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5408.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis