Browse Element(s) Details


OsAffx.5425.1.S1_at

Description tigr:9635.m02295
TID=OsAffx.5425.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AJ437283 DD1A protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2405011/11carboxyl-terminal proteinase, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g24020Os.26886.3.S1_x_at4/117+13610131..13614779transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g24020OsAffx.22421.1.S1_at1/117+13610131..13614779transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g24030OsAffx.5424.1.S1_at11/117+13623190..13623438hypothetical protein
LOC_Os07g24040Os.55085.1.S1_at1/117+13626518..13633387expressed protein
LOC_Os07g24050OsAffx.5425.1.S1_at11/117+13636574..13640975carboxyl-terminal proteinase, putative
LOC_Os07g24060NANA7+13641882..13644420retrotransposon, putative, centromere-specific
LOC_Os07g24070Os.19099.1.S1_x_at2/117+13645876..13648016retrotransposon, putative, centromere-specific
LOC_Os07g24080NANA7+13649363..13650006retrotransposon, putative, centromere-specific
LOC_Os07g24090Os.56264.1.S1_at11/117+13652647..13654147mTERF family protein, expressed
LOC_Os07g24100OsAffx.16391.1.S1_at5/117+13658145..13668557retrotransposon protein, putative, unclassified
LOC_Os07g24100OsAffx.28520.1.S1_at1/117+13658145..13668557retrotransposon protein, putative, unclassified
LOC_Os07g24100OsAffx.25212.1.S1_at1/117+13658145..13668557retrotransposon protein, putative, unclassified
LOC_Os07g24100Os.27422.1.S1_at1/117+13658145..13668557retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5425.1.S1_at--40--731Chr07:13638061..13638082 (22 bp)
ATGATAGCCGTGCTTCTCATGTTGC
LOC_Os07g24050
OsAffx.5425.1.S1_at--151--4891Chr07:13639465..13639489 (25 bp)
GCTTTCAAGAGTCTGGTGCATCCAT
LOC_Os07g24050
OsAffx.5425.1.S1_at--456--6131Chr07:13639512..13639536 (25 bp)
GAGGGCCTCAATGCACTTGAAGCTG
LOC_Os07g24050
OsAffx.5425.1.S1_at--557--6531Chr07:13639537..13639672 (25 bp)
GATTTCACGTCTATCCTGATTTGTA
LOC_Os07g24050
OsAffx.5425.1.S1_at--228--351Chr07:13639681..13639705 (25 bp)
ATAATGTCCATTTCTTTACCCACTG
LOC_Os07g24050
OsAffx.5425.1.S1_at--1152--2871Chr07:13639814..13639838 (25 bp)
AAGGATACCGACAGGTCCACTGGAT
LOC_Os07g24050
OsAffx.5425.1.S1_at--570--1451Chr07:13639873..13639897 (25 bp)
AGAAGGAGCCGAACTTACGCCAGGG
LOC_Os07g24050
OsAffx.5425.1.S1_at--970--6671Chr07:13639904..13639928 (25 bp)
GTTGCTCCTGCATCAACTTACGATG
LOC_Os07g24050
OsAffx.5425.1.S1_at--577--6431Chr07:13639934..13639958 (25 bp)
GATCATTACATCTCCATTAGCCTAC
LOC_Os07g24050
OsAffx.5425.1.S1_at--493--5971Chr07:13640808..13640832 (25 bp)
GAGAAGCCGTTATTTCTAGGCCATT
LOC_Os07g24050
OsAffx.5425.1.S1_at--712--5371Chr07:13640906..13640930 (25 bp)
GAAGAACGAACCGAGCCCTGCGATG
LOC_Os07g24050
Target Sequence 
ATGATAGCCGTGCTTCTCATGTTGCTATGTATCACACACCAAGGGGCTGGTACTTTAGTACTCGAGCTAAAATAGGTATA
TGGGGATCACCCAACCAAGGACGCTTTCAAGAGTCTGGTGCATCCATATTAGTAACCAGCAATGAATTAGAGGGCCTCAA
TGCACTTGAAGCTGGATTTCACGTCTATCCTGATTTGTATAAGGACAATAATGTCCATTTCTTTACCCACTGGACAAAGG
ATACCGACAGGTCCACTGGATGCTACAATATAAAATGCGGAGGGTTTGTGCCAGCAGAAGGAGCCGAACTTACGCCAGGG
CAGGCGGTTGCTCCTGCATCAACTTACGATGGAGAGGATCATTACATCTCCATTAGCCTACATACGGATCCAAACTCAGG
AGATTGGGTATTGTTCAGGGACGATCTGGAGAAGCCGTTATTTCTAGGCCATTTTCCAAAGGAGCTCTGCCCCAAGCTGA
ACGGCGGAGCGCCTCGGATGGCATGGACCGGGTTCGTGAGCTACCCGAAGAACGAACCGAGCCCTGCGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5425.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis