Browse Element(s) Details


OsAffx.5527.1.S1_at

Description tigr:9635.m03437
TID=OsAffx.5527.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3478011/11Ankyrin repeat domain protein 28, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g34740Os.27614.1.S1_at11/117+20811188..20816227expressed protein
LOC_Os07g34750OsAffx.28753.1.S1_at11/117+20817190..20820411hypothetical protein
LOC_Os07g34760OsAffx.16559.1.S1_at11/117+20824300..20825519expressed protein
LOC_Os07g34770NANA7+20826052..20832760transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g34780OsAffx.5527.1.S1_at11/117+20840925..20844298Ankyrin repeat domain protein 28, putative
LOC_Os07g34790OsAffx.5528.1.S1_at11/117+20848144..20849949hypothetical protein
LOC_Os07g34800Os.28943.1.S1_x_at1/117+20853335..20856642retrotransposon protein, putative, unclassified
LOC_Os07g34810NANA7+20857259..20863414transposon protein, putative, unclassified
LOC_Os07g34820OsAffx.5529.1.S1_at11/117+20865385..20866152transient receptor potential cation channel, subfamily N, member 1, putative

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5527.1.S1_at--409--8431Chr07:20842920..20842944 (25 bp)
GGCCAGAAGGTCCATCTTTGCTAAC
LOC_Os07g34780
OsAffx.5527.1.S1_at--616--10711Chr07:20842937..20842961 (25 bp)
TTGCTAACCAGAGCCGATTCGTCAG
LOC_Os07g34780
OsAffx.5527.1.S1_at--867--1751Chr07:20842969..20842993 (25 bp)
ACCTCTTCATTTTGCCGTAATCTAT
LOC_Os07g34780
OsAffx.5527.1.S1_at--549--3691Chr07:20843015..20843039 (25 bp)
CTATTCCTAGGTGGTGATGCTGCTT
LOC_Os07g34780
OsAffx.5527.1.S1_at--22--4911Chr07:20843036..20843060 (25 bp)
GCTTCTCCAAGGCTGACTAGCATTT
LOC_Os07g34780
OsAffx.5527.1.S1_at--1042--2151Chr07:20843064..20843088 (25 bp)
ACAGCGATGGTTCATATCCCGTGCA
LOC_Os07g34780
OsAffx.5527.1.S1_at--481--811Chr07:20843216..20843240 (25 bp)
ATGGTGGTTCGCCACATTTGCGGAA
LOC_Os07g34780
OsAffx.5527.1.S1_at--901--4611Chr07:20843252..20843276 (25 bp)
GCGATGCTGCTGAATGCGACGGATT
LOC_Os07g34780
OsAffx.5527.1.S1_at--408--251Chr07:20843317..20843341 (25 bp)
ATATCCACGGATTTTCGGTCTGCTA
LOC_Os07g34780
OsAffx.5527.1.S1_at--531--6051Chr07:20843397..20843421 (25 bp)
GAGATATTTCTTGCTGTGCCTCAAC
LOC_Os07g34780
OsAffx.5527.1.S1_at--818--8411Chr07:20843432..20843452 (21 bp)
GGCCGATTGCGCTATTTTCTGAAGC
LOC_Os07g34780
Target Sequence 
GGCCAGAAGGTCCATCTTTGCTAACCAGAGCCGATTCGTCAGGGAGGACACCTCTTCATTTTGCCGTAATCTATGGAAGG
CTTGACACAGTTAAGCTATTCCTAGGTGGTGATGCTGCTTCTCCAAGGCTGACTAGCATTTCTGACAGCGATGGTTCATA
TCCCGTGCATGCTGCTGCTATGTTCGGAAGAACCAAGATTATTGATGAGCTCGTGAAGAAATGTCCCAACTACTATGAAC
TGGTTGACGATAAAGGGAGAAATCTTCTGCATATTGCAGTTGAGAGCGAGCAGGAAATGGTGGTTCGCCACATTTGCGGA
AATGATATGTTCGCGATGCTGCTGAATGCGACGGATTATGATGGAAATACCCCTCTCCACCTTGCTGTGAAACAAGGATA
TCCACGGATTTTCGGTCTGCTACTGGGGACAAGAGGTGTTGATATGTGCATTATGAACAAGGATGGCCATACTGCTAGAG
ATATTTCTTGCTGTGCCTCAACGTTAGAGCACGGCCGATTGCGCTATTTTCTGAAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5527.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis