Browse Element(s) Details


OsAffx.5553.1.S1_at

Description tigr:9635.m03650
TID=OsAffx.5553.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3687011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g36820Os.38285.1.A1_at11/117+22054761..22058009Protein of unknown function, DUF614 containing protein, expressed
LOC_Os07g36830OsAffx.28785.1.S1_at10/117+22064721..22069602F-box domain containing protein
LOC_Os07g36840OsAffx.5552.1.S1_at11/117+22072044..22073273F-box domain containing protein
LOC_Os07g36850NANA7+22074147..22075069transposon protein, putative, Pong sub-class
LOC_Os07g36860OsAffx.16590.1.S1_at11/117+22075496..22077485hypothetical protein
LOC_Os07g36870OsAffx.5553.1.S1_at11/117+22080910..22082154F-box domain containing protein, expressed
LOC_Os07g36880Os.53498.1.S1_at11/117+22086306..22088716F-box domain containing protein, expressed
LOC_Os07g36890OsAffx.28786.1.S1_at11/117+22089230..22091643F-box domain containing protein
LOC_Os07g36900OsAffx.5554.1.S1_at11/117+22093436..22097583F-box domain containing protein
LOC_Os07g36910Os.22823.1.A1_at11/117+22100223..22103458F-box domain containing protein, expressed
LOC_Os07g36920Os.16363.1.S1_at11/117+22105972..22108442F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5553.1.S1_at--720--10571Chr07:22081555..22081579 (25 bp)
TTCTCTTCAGTCACTGGACAGTGGC
LOC_Os07g36870
OsAffx.5553.1.S1_at--214--3131Chr07:22081732..22081756 (25 bp)
AATTTCTCCATTGTCAAGCTCCCAT
LOC_Os07g36870
OsAffx.5553.1.S1_at--678--4211Chr07:22081762..22081786 (25 bp)
CCGCCTGGTCGTGACATTGTGGAAT
LOC_Os07g36870
OsAffx.5553.1.S1_at--758--6851Chr07:22081824..22081848 (25 bp)
GTTTGCTTTCTGTAATTGCATCGAC
LOC_Os07g36870
OsAffx.5553.1.S1_at--885--5671Chr07:22081846..22081870 (25 bp)
GACATTTATGCACTCGAGCTCTATT
LOC_Os07g36870
OsAffx.5553.1.S1_at--545--5911Chr07:22081861..22081885 (25 bp)
GAGCTCTATTCTACAACCATGCAAA
LOC_Os07g36870
OsAffx.5553.1.S1_at--83--7351Chr07:22081922..22081946 (25 bp)
GTGCAATTTTAATGCCTTCTCGGGA
LOC_Os07g36870
OsAffx.5553.1.S1_at--518--10591Chr07:22081938..22081962 (25 bp)
TTCTCGGGATGGATTTCGCGTGCTA
LOC_Os07g36870
OsAffx.5553.1.S1_at--1162--191Chr07:22081950..22081974 (25 bp)
ATTTCGCGTGCTAGGTGTGACTGGC
LOC_Os07g36870
OsAffx.5553.1.S1_at--268--1211Chr07:22081992..22082016 (25 bp)
AGTTTCTCCTATTTGTGTGAGCGGA
LOC_Os07g36870
OsAffx.5553.1.S1_at--12--5491Chr07:22082093..22082117 (25 bp)
GAACTTCTCTGCCATTCCTGTATGT
LOC_Os07g36870
Target Sequence 
TTCTCTTCAGTCACTGGACAGTGGCGAGCCACTGCATCTCCCTGCTGGGGCGATCTGAGCCCTGCCTTCTCGCGCCCCGC
TTGCCGCTCCCTGTTGCGCCGCAGCTACGCATACGGCTGCTTCTACTGGATGATGGGTGACTCAGGGAATCTGCTTGTGC
TCGACATGTGTAAGATGAATTTCTCCATTGTCAAGCTCCCATCGAGCCCGCCTGGTCGTGACATTGTGGAATGCGCCATC
GTAGAGGCAGGAGAAGGCAAGATTGGGATGTTTGCTTTCTGTAATTGCATCGACATTTATGCACTCGAGCTCTATTCTAC
AACCATGCAAAATGAAGGAAGAGTTGCCAGCAAGTGGAGTTTTGAGAGTGCAATTTTAATGCCTTCTCGGGATGGATTTC
GCGTGCTAGGTGTGACTGGCAAGGAATTGTGCTTACAAGTTTCTCCTATTTGTGTGAGCGGATGTTATTTGCTGGAGTTC
AGTACAAATCCAAGTTGCAAGAAACTTGAGTTTGTCCGGAGGGTGATCAGGGGTGTTCGAACTTCTCTGCCATTCCTGTA
TGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5553.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis