Browse Element(s) Details


OsAffx.5560.1.S1_at

Description tigr:9635.m03707
TID=OsAffx.5560.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g373909/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g37360Os.51851.1.S1_at4/117+22384653..22385267transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os07g37370OsAffx.28798.2.S1_s_at11/117+22388990..22390874hypothetical protein
LOC_Os07g37370OsAffx.28798.1.S1_at8/117+22388990..22390874hypothetical protein
LOC_Os07g37380NANA7+22402345..22403543expressed protein
LOC_Os07g37390OsAffx.5560.1.S1_at9/117+22408440..22409259hypothetical protein
LOC_Os07g37400Os.8724.1.S1_at11/117+22409532..22411377F-box domain containing protein, expressed
LOC_Os07g37410OsAffx.28340.3.S1_x_at11/117+22413096..22413977hypothetical protein
LOC_Os07g37410OsAffx.28340.1.S1_x_at1/117+22413096..22413977hypothetical protein
LOC_Os07g37420OsAffx.5561.1.S1_s_at11/117+22414480..22415518Short-chain type dehydrogenase/reductase, putative, expressed
LOC_Os07g37430OsAffx.28800.1.S1_x_at8/117+22416251..22417102hypothetical protein
LOC_Os07g37440OsAffx.16597.1.S1_at11/117+22417314..22418394hypothetical protein
LOC_Os07g37454OsAffx.28801.1.S1_s_at11/117+22425967..22427944Organic cation transporter 3, putative, expressed
LOC_Os07g37454Os.55618.1.S2_at11/117+22425967..22427944Organic cation transporter 3, putative, expressed
LOC_Os07g37454Os.55618.1.S1_at11/117+22425967..22427944Organic cation transporter 3, putative, expressed
LOC_Os07g37470Os.47463.1.S1_x_at3/117+22433886..22439389transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g37470Os.14491.2.S1_x_at2/117+22433886..22439389transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5560.1.S1_at--158--2091Chr07:22408470..22408494 (25 bp)
ACATTTCTCAGCCCCTCGCTGGTGA
LOC_Os07g37390
OsAffx.5560.1.S1_at--633--4531Chr07:22408480..22408504 (25 bp)
GCCCCTCGCTGGTGACCAAGCATGT
LOC_Os07g37390
OsAffx.5560.1.S1_at--729--2691Chr07:22408497..22408521 (25 bp)
AAGCATGTGCGGCACCCGGCCTCGA
LOC_Os07g37390
OsAffx.5560.1.S1_at--573--9391NONE
TCGATCTTCGCCGGTGGCCAAGATG
NONE
OsAffx.5560.1.S1_at--238--7731Chr07:22408530..22408674 (25 bp)
GGTGGCCAAGATGGGTCGCACACAT
LOC_Os07g37390
OsAffx.5560.1.S1_at--565--8451Chr07:22408435..22408676 (25 bp)
TGGCCAAGATGGGTCGCACACATAT
NONE
OsAffx.5560.1.S1_at--791--4391Chr07:22408658..22408678 (21 bp)
GCCAAGATGGGTCGCACACATATTT
LOC_Os07g37390
OsAffx.5560.1.S1_at--96--3231Chr07:22408658..22408680 (23 bp)
CAAGATGGGTCGCACACATATTTTA
LOC_Os07g37390
OsAffx.5560.1.S1_at--1004--6251Chr07:22408659..22408683 (25 bp)
GATGGGTCGCACACATATTTTAATT
LOC_Os07g37390
OsAffx.5560.1.S1_at--31--3591Chr07:22408672..22408696 (25 bp)
CATATTTTAATTCTAATGCACCTAA
LOC_Os07g37390
OsAffx.5560.1.S1_at--375--3011Chr07:22408686..22408710 (25 bp)
AATGCACCTAAGTGCCACATCAACG
LOC_Os07g37390
Target Sequence 
ACATTTCTCAGCCCCTCGCTGGTGACCAAGCATGTGCGGCACCCGGCCTCGATCTTCGCCGGTGGCCAAGATGGGTCGCA
CACATATTTTAATTCTAATGCACCTAAGTGCCACATCAACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5560.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis