Browse Element(s) Details


OsAffx.5569.1.S1_at

Description tigr:9635.m03854
TID=OsAffx.5569.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3870011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g38640OsAffx.28814.1.S1_x_at11/117+23207019..23208908Protein kinase domain containing protein
LOC_Os07g38650OsAffx.16615.1.S1_at11/117+23211913..23212245hypothetical protein
LOC_Os07g38660Os.55353.1.S1_at1/117+23212905..23213297hypothetical protein
LOC_Os07g38670Os.50591.1.S1_at3/117+23221421..23222113hypothetical protein
LOC_Os07g38680Os.47130.4.A1_x_at4/117+23224138..23224461retrotransposon protein, putative, unclassified
LOC_Os07g38690Os.55353.1.S1_at11/117+23225690..23226285Ubiquitin-like protein SMT3, putative, expressed
LOC_Os07g38700OsAffx.5569.1.S1_at11/117+23226628..23227611hypothetical protein
LOC_Os07g38710OsAffx.28815.1.S1_at11/117+23232050..23233047hypothetical protein
LOC_Os07g38720OsAffx.28816.1.S1_at11/117+23233955..23234500hypothetical protein
LOC_Os07g38730Os.9504.1.S1_at11/117+23242103..23245524Tubulin alpha-1 chain, putative, expressed
LOC_Os07g38740Os.57300.1.S1_at10/117+23246386..23246953expressed protein
LOC_Os07g38750OsAffx.16617.1.S1_at11/117+23249643..23250590AP2 domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5569.1.S1_at--784--4531Chr07:23227053..23227077 (25 bp)
GCCCAGGGAGGGTGCTTTCATCTAC
LOC_Os07g38700
OsAffx.5569.1.S1_at--324--7331Chr07:23227064..23227088 (25 bp)
GTGCTTTCATCTACCATTGCAGGGA
LOC_Os07g38700
OsAffx.5569.1.S1_at--1007--51Chr07:23227079..23227103 (25 bp)
ATTGCAGGGAGCTCAGCCCTAAGCA
LOC_Os07g38700
OsAffx.5569.1.S1_at--940--10571Chr07:23227147..23227171 (25 bp)
TTCTCTCCGTTCAGCAAGCCGAGTG
LOC_Os07g38700
OsAffx.5569.1.S1_at--140--5731Chr07:23227259..23227283 (25 bp)
GACTGCAGGACTTGATCGATCTCTA
LOC_Os07g38700
OsAffx.5569.1.S1_at--967--811Chr07:23227291..23227315 (25 bp)
ATGGTGCCCACTGACGATGAGCGCG
LOC_Os07g38700
OsAffx.5569.1.S1_at--816--691Chr07:23227307..23227331 (25 bp)
ATGAGCGCGGCGAATTCGACGTCAC
LOC_Os07g38700
OsAffx.5569.1.S1_at--432--9371Chr07:23227322..23227346 (25 bp)
TCGACGTCACGTACTGTGGCAGGAA
LOC_Os07g38700
OsAffx.5569.1.S1_at--884--2571Chr07:23227421..23227445 (25 bp)
AACGGAGCAGGTTCGTGACGATCAA
LOC_Os07g38700
OsAffx.5569.1.S1_at--672--1731Chr07:23227453..23227477 (25 bp)
ACCATGGTGGGAGTCAAGCGCGCAT
LOC_Os07g38700
OsAffx.5569.1.S1_at--171--7711Chr07:23227506..23227530 (25 bp)
GGGTCTGATGGATTTATGCTTAAGC
LOC_Os07g38700
Target Sequence 
GCCCAGGGAGGGTGCTTTCATCTACCATTGCAGGGAGCTCAGCCCTAAGCAGACGCCGGAGGAATGCAACATGAAGGACG
GCGACGAGATCGCCTTCTCTCCGTTCAGCAAGCCGAGTGCCTTCGTCACCCTTACGATCAGGGGCAACAACAACAATGGC
GGCGGCAGCGTCGTCGTCACCCGCACCATGCTCAGGACCCAAGAACGACTGCAGGACTTGATCGATCTCTACTTCGCCAT
GGTGCCCACTGACGATGAGCGCGGCGAATTCGACGTCACGTACTGTGGCAGGAAGGTCGACATCGAGAAGACGCCGGCGG
ATTACGGGATGGAGGACGGCGACCAGCTCCGCCTTGCTCCGGCGACCGAACGGAGCAGGTTCGTGACGATCAATCTGGTG
ACCATGGTGGGAGTCAAGCGCGCATACACCCTGCGAAGGACAGACGAGCTGCAGGGTCTGATGGATTTATGCTTAAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5569.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis