Browse Element(s) Details


OsAffx.16615.1.S1_at

Description tigr:9635.m03849
TID=OsAffx.16615.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3865011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g38610Os.7666.1.S1_at11/117+23185600..23190650UDP-galactose transporter family protein, expressed
LOC_Os07g38620Os.5497.3.S1_x_at11/117+23192535..23198087root border cell-specific protein, putative, expressed
LOC_Os07g38620Os.5497.1.S1_a_at10/117+23192535..23198087root border cell-specific protein, putative, expressed
LOC_Os07g38630OsAffx.5568.1.S1_at11/117+23201132..23201618hypothetical protein
LOC_Os07g38640OsAffx.28814.1.S1_x_at11/117+23207019..23208908Protein kinase domain containing protein
LOC_Os07g38650OsAffx.16615.1.S1_at11/117+23211913..23212245hypothetical protein
LOC_Os07g38660Os.55353.1.S1_at1/117+23212905..23213297hypothetical protein
LOC_Os07g38670Os.50591.1.S1_at3/117+23221421..23222113hypothetical protein
LOC_Os07g38680Os.47130.4.A1_x_at4/117+23224138..23224461retrotransposon protein, putative, unclassified
LOC_Os07g38690Os.55353.1.S1_at11/117+23225690..23226285Ubiquitin-like protein SMT3, putative, expressed
LOC_Os07g38700OsAffx.5569.1.S1_at11/117+23226628..23227611hypothetical protein
LOC_Os07g38710OsAffx.28815.1.S1_at11/117+23232050..23233047hypothetical protein
LOC_Os07g38720OsAffx.28816.1.S1_at11/117+23233955..23234500hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16615.1.S1_at--813--5751Chr07:23211954..23211978 (25 bp)
GACGGTGAAGCCGATCTTCATCACG
LOC_Os07g38650
OsAffx.16615.1.S1_at--566--4051Chr07:23211965..23211989 (25 bp)
CGATCTTCATCACGCTCAAGGTGAT
LOC_Os07g38650
OsAffx.16615.1.S1_at--835--671Chr07:23211988..23212012 (25 bp)
ATGGACCAGGAAGACCGGAGGATCC
LOC_Os07g38650
OsAffx.16615.1.S1_at--172--951Chr07:23211995..23212019 (25 bp)
AGGAAGACCGGAGGATCCGCCACAC
LOC_Os07g38650
OsAffx.16615.1.S1_at--1148--991Chr07:23212006..23212030 (25 bp)
AGGATCCGCCACACCATCAGGATGG
LOC_Os07g38650
OsAffx.16615.1.S1_at--554--3371Chr07:23212017..23212041 (25 bp)
CACCATCAGGATGGCCGACAAGCTG
LOC_Os07g38650
OsAffx.16615.1.S1_at--579--7111Chr07:23212048..23212072 (25 bp)
GTCATGGACATGTACTACGCCAAGG
LOC_Os07g38650
OsAffx.16615.1.S1_at--924--3731Chr07:23212105..23212129 (25 bp)
CTCTTCGACGGCATACGGCTGAAGG
LOC_Os07g38650
OsAffx.16615.1.S1_at--31--3571Chr07:23212116..23212140 (25 bp)
CATACGGCTGAAGGGCGACATGACG
LOC_Os07g38650
OsAffx.16615.1.S1_at--780--5611Chr07:23212168..23212192 (25 bp)
GACACTGTCGATTTCTTCCCGGTTA
LOC_Os07g38650
OsAffx.16615.1.S1_at--881--171Chr07:23212178..23212202 (25 bp)
ATTTCTTCCCGGTTATGATCGGCGG
LOC_Os07g38650
Target Sequence 
GACGGTGAAGCCGATCTTCATCACGCTCAAGGTGATGGACCAGGAAGACCGGAGGATCCGCCACACCATCAGGATGGCCG
ACAAGCTGCAGGTGGTCATGGACATGTACTACGCCAAGGCGCCCGATGTCACCTACGGCACGGGGACCTTCCTCTTCGAC
GGCATACGGCTGAAGGGCGACATGACGCCGATGGGGCTCGAGATGGTGGACGGGGACACTGTCGATTTCTTCCCGGTTAT
GATCGGCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16615.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis