Browse Element(s) Details


Os.5497.3.S1_x_at

Description gb:AK107962.1
DB_XREF= gi:32993171
TID=Os.5497.3
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5497 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-135-C10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-135-C10, full insert sequence.
FL= gb:AK107962.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3862011/11root border cell-specific protein, putative, expressed
LOC_Os04g238901/11Nonphototropic hypocotyl protein 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g38580Os.25013.1.S1_x_at11/117+23168069..23171991zinc finger family protein, putative, expressed
LOC_Os07g38590Os.26705.1.S2_at11/117+23176530..23181113Carboxyl-terminal peptidase, putative, expressed
LOC_Os07g38590Os.26705.1.S1_at11/117+23176530..23181113Carboxyl-terminal peptidase, putative, expressed
LOC_Os07g38600Os.14815.1.S1_at10/117+23183619..23185231expressed protein
LOC_Os07g38610Os.7666.1.S1_at11/117+23185600..23190650UDP-galactose transporter family protein, expressed
LOC_Os07g38620Os.5497.3.S1_x_at11/117+23192535..23198087root border cell-specific protein, putative, expressed
LOC_Os07g38620Os.5497.1.S1_a_at10/117+23192535..23198087root border cell-specific protein, putative, expressed
LOC_Os07g38630OsAffx.5568.1.S1_at11/117+23201132..23201618hypothetical protein
LOC_Os07g38640OsAffx.28814.1.S1_x_at11/117+23207019..23208908Protein kinase domain containing protein
LOC_Os07g38650OsAffx.16615.1.S1_at11/117+23211913..23212245hypothetical protein
LOC_Os07g38660Os.55353.1.S1_at1/117+23212905..23213297hypothetical protein
LOC_Os07g38670Os.50591.1.S1_at3/117+23221421..23222113hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009637biological_processresponse to blue light
GO:0009638biological_processphototropism
GO:0009902biological_processchloroplast relocation
GO:0009903biological_processchloroplast avoidance movement
GO:0009904biological_processchloroplast accumulation movement
GO:0010118biological_processstomatal movement
GO:0010119biological_processregulation of stomatal movement
GO:0046777biological_processprotein amino acid autophosphorylation
GO:0005737cellular_componentcytoplasm
GO:0009898cellular_componentinternal side of plasma membrane
GO:0016020cellular_componentmembrane
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0009882molecular_functionblue light photoreceptor activity
GO:0010181molecular_functionFMN binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5497.3.S1_x_at--415--551Chr07:23196817..23196841 (25 bp)
ATCCGCGGACGCGTTCGAGGTGATC
LOC_Os07g38620
Os.5497.3.S1_x_at--1055--1031Chr07:23196782..23196806 (25 bp)
AGGTGCGGCCCTTAGCATCGTGATC
LOC_Os07g38620
Os.5497.3.S1_x_at--104--8851Chr07:23196762..23196786 (25 bp)
TGATCGCCCTTTTATTCCTTGGACA
LOC_Os07g38620
Os.5497.3.S1_x_at--426--8511Chr07:23196743..23196767 (25 bp)
TGGACACCTCACTCCTTGTTTGTGA
LOC_Os07g38620
Os.5497.3.S1_x_at--1124--3611Chr07:23196729..23196753 (25 bp)
CTTGTTTGTGATGTCCCCGAGGAGC
LOC_Os07g38620
Os.5497.3.S1_x_at--754--731Chr07:23196719..23196743 (25 bp)
ATGTCCCCGAGGAGCGAGGAACCTA
LOC_Os07g38620
Os.5497.3.S1_x_at--611--8171Chr07:23196702..23196726 (25 bp)
GGAACCTAACCAGGCAGTAGCTTAT
LOC_Os07g38620
Os.5497.3.S1_x_at--72--2391Chr07:23196653..23196677 (25 bp)
AAACGGTTGGAATCGCTAGCATCTC
LOC_Os07g38620
Os.5497.3.S1_x_at--904--5251Chr07:23196644..23196668 (25 bp)
GAATCGCTAGCATCTCTTCGGAAAC
LOC_Os07g38620
Os.5497.3.S1_x_at--342--8151Chr07:23196625..23196649 (25 bp)
GGAAACGATGCTTGATCGGCCGGTA
LOC_Os07g38620
Os.5497.3.S1_x_at--7--88515Chr12:13941349..13941373 (25 bp)
TGATCGGCCGGTAATTGACCATATT
NONE
Target Sequence 
ATCCGCGGACGCGTTCGAGGTGATCCGCGCTCACCAGGTGCGGCCCTTAGCATCGTGATCGCCCTTTTATTCCTTGGACA
CCTCACTCCTTGTTTGTGATGTCCCCGAGGAGCGAGGAACCTAACCAGGCAGTAGCTTATGCAACTAGGGGTGAAAACGA
TTGGAAACGGTTGGAATCGCTAGCATCTCTTCGGAAACGATGCTTGATCGGCCGGTAATTGACCATATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5497.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis