Browse Element(s) Details


Os.7666.1.S1_at

Description gb:AK070473.1
DB_XREF= gi:32980497
TID=Os.7666.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7666 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023052O11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023052O11, full insert sequence.
FL= gb:AK070473.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3861011/11UDP-galactose transporter family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g38560Os.23379.1.A1_at11/117+23158710..23162843Adenylyl-sulfate kinase, chloroplast precursor, putative, expressed
LOC_Os07g38570OsAffx.28813.1.S1_at11/117+23164052..23164770expressed protein
LOC_Os07g38580Os.25013.1.S1_x_at11/117+23168069..23171991zinc finger family protein, putative, expressed
LOC_Os07g38590Os.26705.1.S2_at11/117+23176530..23181113Carboxyl-terminal peptidase, putative, expressed
LOC_Os07g38590Os.26705.1.S1_at11/117+23176530..23181113Carboxyl-terminal peptidase, putative, expressed
LOC_Os07g38600Os.14815.1.S1_at10/117+23183619..23185231expressed protein
LOC_Os07g38610Os.7666.1.S1_at11/117+23185600..23190650UDP-galactose transporter family protein, expressed
LOC_Os07g38620Os.5497.3.S1_x_at11/117+23192535..23198087root border cell-specific protein, putative, expressed
LOC_Os07g38620Os.5497.1.S1_a_at10/117+23192535..23198087root border cell-specific protein, putative, expressed
LOC_Os07g38630OsAffx.5568.1.S1_at11/117+23201132..23201618hypothetical protein
LOC_Os07g38640OsAffx.28814.1.S1_x_at11/117+23207019..23208908Protein kinase domain containing protein
LOC_Os07g38650OsAffx.16615.1.S1_at11/117+23211913..23212245hypothetical protein
LOC_Os07g38660Os.55353.1.S1_at1/117+23212905..23213297hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0015780biological_processnucleotide-sugar transport
GO:0016020cellular_componentmembrane
GO:0005338molecular_functionnucleotide-sugar transporter activity
GO:0005456molecular_functionCMP-sialic acid transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7666.1.S1_at--1064--5911Chr07:23186137..23186161 (25 bp)
GAGCTTTACTTTCATGGCTTCATCT
LOC_Os07g38610
Os.7666.1.S1_at--836--6411Chr07:23185931..23185955 (25 bp)
GATCTACTGAAGTTTTGACCGCTTG
LOC_Os07g38610
Os.7666.1.S1_at--24--10411Chr07:23185919..23185943 (25 bp)
TTTTGACCGCTTGACTGATGATTTG
LOC_Os07g38610
Os.7666.1.S1_at--456--711Chr07:23185902..23185926 (25 bp)
ATGATTTGAAGCTCTCTTTTGCCCG
LOC_Os07g38610
Os.7666.1.S1_at--77--4931Chr07:23185868..23185892 (25 bp)
GCTTGCCATTTATTTCTTACTCCTA
LOC_Os07g38610
Os.7666.1.S1_at--1010--9891Chr07:23185851..23185875 (25 bp)
TACTCCTAATTCATTTCAGCCTACT
LOC_Os07g38610
Os.7666.1.S1_at--722--2771Chr07:23185820..23185844 (25 bp)
AAGAGCGTATGTGCTACCACGTAGC
LOC_Os07g38610
Os.7666.1.S1_at--116--3591Chr07:23185764..23185788 (25 bp)
CATTATCTGTAGTTCTTTGGAGCAT
LOC_Os07g38610
Os.7666.1.S1_at--787--2911Chr07:23185715..23185739 (25 bp)
AAGGATGATTCACCCAACTTGCGGC
LOC_Os07g38610
Os.7666.1.S1_at--1036--411Chr07:23185631..23185655 (25 bp)
ATCATCACAGTGGTGTGGACCGGCC
LOC_Os07g38610
Os.7666.1.S1_at--876--8091Chr07:23185615..23185639 (25 bp)
GGACCGGCCCATAGGGTGAATTCAT
LOC_Os07g38610
Target Sequence 
GAGCTTTACTTTCATGGCTTCATCTTTTGAAGTANCGGCAAGTGGCAGCATAGAATGATTTTTNNGGGTGGCACCGTNGG
TACTACTGNAGAATGCCGGAGAAGAGATTCATTCTTGACCNATCTGACTACNCTTGAGNCTTGAGCCAACTTCTTGATGG
NATTTCGGACTTTACCTCCAAGCCGAGCCAACCAGCCGACGANCAATGCAGATCTACTGAAGTTTTGACCGCTTGACTGA
TGATTTGAAGCTCTCTTTTGCCCGTCCCCAGATGCTTGCCATTTATTTCTTACTCCTAATTCATTTCAGCCTACTATAGC
GAAGAGCGTATGTGCTACCACGTAGCAAACATTTTCTGACAAACAAGTATGTCATATCATTATCTGTAGTTCTTTGGAGC
ATTATCTGTAGTTTGTACAAATACGAAAGGATGATTCACCCAACTTGCGGCAGCTTCTCTGGCCACTGTTCTTGTCATTA
TTTGAGCCCAAAGGGGTGGGATTCAGAAACATCATCACAGTGGTGTGGACCGGCCCATAGGGTGAATTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7666.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis