Browse Element(s) Details


OsAffx.28813.1.S1_at

Description tigr:9635.m03841
TID=OsAffx.28813.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3857011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g38510NANA7+23137587..23140611retrotransposon protein, putative, unclassified
LOC_Os07g38520Os.47130.4.A1_x_at3/117+23141813..23142136retrotransposon protein, putative, unclassified
LOC_Os07g38530Os.2221.1.S1_a_at11/117+23144311..23147915Protein kinase domain containing protein, expressed
LOC_Os07g38540Os.7072.1.S1_at11/117+23151490..2315239940S ribosomal protein S13, putative, expressed
LOC_Os07g38550Os.5063.1.S1_at11/117+23153429..23155647expressed protein
LOC_Os07g38550OsAffx.28812.1.S1_at2/117+23153429..23155647expressed protein
LOC_Os07g38560Os.23379.1.A1_at11/117+23158710..23162843Adenylyl-sulfate kinase, chloroplast precursor, putative, expressed
LOC_Os07g38570OsAffx.28813.1.S1_at11/117+23164052..23164770expressed protein
LOC_Os07g38580Os.25013.1.S1_x_at11/117+23168069..23171991zinc finger family protein, putative, expressed
LOC_Os07g38590Os.26705.1.S2_at11/117+23176530..23181113Carboxyl-terminal peptidase, putative, expressed
LOC_Os07g38590Os.26705.1.S1_at11/117+23176530..23181113Carboxyl-terminal peptidase, putative, expressed
LOC_Os07g38600Os.14815.1.S1_at10/117+23183619..23185231expressed protein
LOC_Os07g38610Os.7666.1.S1_at11/117+23185600..23190650UDP-galactose transporter family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28813.1.S1_at--1065--3291Chr07:23164084..23164108 (25 bp)
CACAAACAAAAAACCGCACGCAACG
LOC_Os07g38570
OsAffx.28813.1.S1_at--176--2371Chr07:23164094..23164118 (25 bp)
AAACCGCACGCAACGCAACAACGTA
LOC_Os07g38570
OsAffx.28813.1.S1_at--607--2591Chr07:23164105..23164129 (25 bp)
AACGCAACAACGTACCACGAGTCTA
LOC_Os07g38570
OsAffx.28813.1.S1_at--194--6971Chr07:23164116..23164140 (25 bp)
GTACCACGAGTCTACGAGGCAGATG
LOC_Os07g38570
OsAffx.28813.1.S1_at--844--1871Chr07:23164121..23164145 (25 bp)
ACGAGTCTACGAGGCAGATGGTGTT
LOC_Os07g38570
OsAffx.28813.1.S1_at--111--9951Chr07:23164128..23164152 (25 bp)
TACGAGGCAGATGGTGTTCAGCGTC
LOC_Os07g38570
OsAffx.28813.1.S1_at--1014--5031Chr07:23164134..23164158 (25 bp)
GCAGATGGTGTTCAGCGTCGCGTGG
LOC_Os07g38570
OsAffx.28813.1.S1_at--355--4691Chr07:23164183..23164207 (25 bp)
GCGGAGCTGTGCCAGGGACAGGGCG
LOC_Os07g38570
OsAffx.28813.1.S1_at--442--4511Chr07:23164294..23164318 (25 bp)
GCCGACTGGCTCTTCGTGTTCTTCT
LOC_Os07g38570
OsAffx.28813.1.S1_at--639--1951Chr07:23164298..23164322 (25 bp)
ACTGGCTCTTCGTGTTCTTCTGCCT
LOC_Os07g38570
OsAffx.28813.1.S1_at--430--9151Chr07:23164328..23164352 (25 bp)
TGCCGGACTACTACGTGCCGGGCTC
LOC_Os07g38570
Target Sequence 
CACAAACAAAAAACCGCACGCAACGCAACAACGTACCACGAGTCTACGAGGCAGATGGTGTTCAGCGTCGCGTGGGTGGC
GGCGGCGGCGCGGGTGCCGGCGGAGCTGTGCCAGGGACAGGGCGGGGCGCGCGGGCGGCGGCGGCGGCTGCGGGCCGACG
AGGTGCTGCGCGCGCTGCTCGTGGCGCCCGTGCGGGAGCTCGAGCGCCTCGCCGACTGGCTCTTCGTGTTCTTCTGCCTC
CCCCTGCCGGACTACTACGTGCCGGGCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28813.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis