Browse Element(s) Details


Os.5063.1.S1_at

Description gb:AK120026.1
DB_XREF= gi:37989649
TID=Os.5063.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.5063 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-186-C10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-186-C10, full insert sequence.
FL= gb:AK120026.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3855011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g38500NANA7+23131297..23137267retrotransposon protein, putative, unclassified
LOC_Os07g38510NANA7+23137587..23140611retrotransposon protein, putative, unclassified
LOC_Os07g38520Os.47130.4.A1_x_at3/117+23141813..23142136retrotransposon protein, putative, unclassified
LOC_Os07g38530Os.2221.1.S1_a_at11/117+23144311..23147915Protein kinase domain containing protein, expressed
LOC_Os07g38540Os.7072.1.S1_at11/117+23151490..2315239940S ribosomal protein S13, putative, expressed
LOC_Os07g38550Os.5063.1.S1_at11/117+23153429..23155647expressed protein
LOC_Os07g38550OsAffx.28812.1.S1_at2/117+23153429..23155647expressed protein
LOC_Os07g38560Os.23379.1.A1_at11/117+23158710..23162843Adenylyl-sulfate kinase, chloroplast precursor, putative, expressed
LOC_Os07g38570OsAffx.28813.1.S1_at11/117+23164052..23164770expressed protein
LOC_Os07g38580Os.25013.1.S1_x_at11/117+23168069..23171991zinc finger family protein, putative, expressed
LOC_Os07g38590Os.26705.1.S2_at11/117+23176530..23181113Carboxyl-terminal peptidase, putative, expressed
LOC_Os07g38590Os.26705.1.S1_at11/117+23176530..23181113Carboxyl-terminal peptidase, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5063.1.S1_at--534--6491Chr07:23155086..23155110 (25 bp)
GATAGCCGGCGCATGGCGCAGGAGC
LOC_Os07g38550
Os.5063.1.S1_at--969--931Chr07:23155203..23155227 (25 bp)
AGGAAGACGGCGTTCAGCTACGACT
LOC_Os07g38550
Os.5063.1.S1_at--23--1411Chr07:23155207..23155231 (25 bp)
AGACGGCGTTCAGCTACGACTCCAA
LOC_Os07g38550
Os.5063.1.S1_at--781--4851Chr07:23155219..23155243 (25 bp)
GCTACGACTCCAAGAGCTACGCGCT
LOC_Os07g38550
Os.5063.1.S1_at--1083--1911Chr07:23155331..23155355 (25 bp)
ACGGGACAGACGAGCGCGTGCAATA
LOC_Os07g38550
Os.5063.1.S1_at--592--6051Chr07:23155568..23155592 (25 bp)
GAGATTGTAAACGTATGCATCCTGA
LOC_Os07g38550
Os.5063.1.S1_at--327--7051Chr07:23155574..23155598 (25 bp)
GTAAACGTATGCATCCTGACATCTT
LOC_Os07g38550
Os.5063.1.S1_at--730--1891Chr07:23155578..23155602 (25 bp)
ACGTATGCATCCTGACATCTTGAAT
LOC_Os07g38550
Os.5063.1.S1_at--139--651Chr07:23155582..23155606 (25 bp)
ATGCATCCTGACATCTTGAATTGTT
LOC_Os07g38550
Os.5063.1.S1_at--536--3631Chr07:23155596..23155620 (25 bp)
CTTGAATTGTTGATGTGGTGCAGTA
LOC_Os07g38550
Os.5063.1.S1_at--190--6251Chr07:23155607..23155631 (25 bp)
GATGTGGTGCAGTAAGTAATAAAAA
LOC_Os07g38550
Target Sequence 
GATAGCCGGCGCATGGCGCAGGAGCGATCGGCGAGGGCGAANCTGCGGTGGAAGGCCGTGGCGCAGGAGATCATGGCGAG
GAGGAGCGGCGGCGGCGGCGGCGGATCAGGGCGGCGGAGGAAGACGGCGTTCAGCTACGACTCCAAGAGCTACGCGCTCA
ACTTCGACGACCAGGCCGCCGGCGCCNGAGTAAGAGCTCCAGCCTCCAGCTGNTACGTCGCCGGTGAGCTAGAGCTAGCT
GCAGAGACGGGACAGACGAGCGCGTGCAATATCGCGCTCGCGCGCGACGGCCGGCCGGCCGGCGAGGGGACGGAGTGCTC
GCCGGTAGCTCCTCCGGTGACCTACCCGGTGGTGTGCATTGCATGCATGGATGGCGGGATCCATGTGAAGACAGAGAGAG
ATCAAGCTTGAAGAATGAAGAGCCTGAAGGGCGGTGGTTCTTGTTCGAGTTTTGTTTCTTTGGCTGNTTTTTTTTTCATT
TTTGAGATTGTAAACGTATGCATCCTGACATCTTGAATTGTTGATGTGGTGCAGTAAGTAATAAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5063.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis