Browse Element(s) Details


Os.7072.1.S1_at

Description gb:AK063015.1
DB_XREF= gi:32973033
TID=Os.7072.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7072 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-110-A09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-110-A09, full insert sequence.
FL= gb:AK063015.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3854011/1140S ribosomal protein S13, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g38500NANA7+23131297..23137267retrotransposon protein, putative, unclassified
LOC_Os07g38510NANA7+23137587..23140611retrotransposon protein, putative, unclassified
LOC_Os07g38520Os.47130.4.A1_x_at3/117+23141813..23142136retrotransposon protein, putative, unclassified
LOC_Os07g38530Os.2221.1.S1_a_at11/117+23144311..23147915Protein kinase domain containing protein, expressed
LOC_Os07g38540Os.7072.1.S1_at11/117+23151490..2315239940S ribosomal protein S13, putative, expressed
LOC_Os07g38550Os.5063.1.S1_at11/117+23153429..23155647expressed protein
LOC_Os07g38550OsAffx.28812.1.S1_at2/117+23153429..23155647expressed protein
LOC_Os07g38560Os.23379.1.A1_at11/117+23158710..23162843Adenylyl-sulfate kinase, chloroplast precursor, putative, expressed
LOC_Os07g38570OsAffx.28813.1.S1_at11/117+23164052..23164770expressed protein
LOC_Os07g38580Os.25013.1.S1_x_at11/117+23168069..23171991zinc finger family protein, putative, expressed
LOC_Os07g38590Os.26705.1.S2_at11/117+23176530..23181113Carboxyl-terminal peptidase, putative, expressed
LOC_Os07g38590Os.26705.1.S1_at11/117+23176530..23181113Carboxyl-terminal peptidase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000911biological_processcytokinesis by cell plate formation
GO:0006412biological_processprotein biosynthesis
GO:0009965biological_processleaf morphogenesis
GO:0010090biological_processtrichome morphogenesis (sensu Magnoliophyta)
GO:0005843cellular_componentcytosolic small ribosomal subunit (sensu Eukaryota)
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7072.1.S1_at--952--5931Chr07:23152012..23152036 (25 bp)
GAGCACTCTCGTGGCCTGAAGTGGA
LOC_Os07g38540
Os.7072.1.S1_at--944--8971Chr07:23152039..23152063 (25 bp)
TGAAGGTTTCGTTCGTTTTCAGCTT
LOC_Os07g38540
Os.7072.1.S1_at--702--3391Chr07:23152058..23152082 (25 bp)
CAGCTTCTTTTTTGGGCGACTTGAA
LOC_Os07g38540
Os.7072.1.S1_at--366--7571Chr07:23152071..23152095 (25 bp)
GGGCGACTTGAATTCTCTTGACAGC
LOC_Os07g38540
Os.7072.1.S1_at--239--3631Chr07:23152077..23152101 (25 bp)
CTTGAATTCTCTTGACAGCCATGGA
LOC_Os07g38540
Os.7072.1.S1_at--824--3371Chr07:23152092..23152116 (25 bp)
CAGCCATGGAGTTTTGTTTAATCTT
LOC_Os07g38540
Os.7072.1.S1_at--432--4891Chr07:23152183..23152207 (25 bp)
GCTTACTGAGACTCGATCTAGGAAT
LOC_Os07g38540
Os.7072.1.S1_at--1031--5711Chr07:23152192..23152216 (25 bp)
GACTCGATCTAGGAATGCTTTTGTT
LOC_Os07g38540
Os.7072.1.S1_at--447--5991Chr07:23152267..23152291 (25 bp)
GAGACTCGGATCAGATTTTATTTTC
LOC_Os07g38540
Os.7072.1.S1_at--586--6751Chr07:23152323..23152347 (25 bp)
GTTCAATTTACACCTTGACTTTGGG
LOC_Os07g38540
Os.7072.1.S1_at--759--8931Chr07:23152338..23152362 (25 bp)
TGACTTTGGGTAGTTCTTTCTAAAG
LOC_Os07g38540
Target Sequence 
GAGCACTCTCGTGGCCTGAAGTGGAACTGAAGGTTTCGTTCGTTTTCAGCTTCTTTTTTGGGCGACTTGAATTCTCTTGA
CAGCCATGGAGTTTTGTTTAATCTTAAGTAAGTAGGAATGCTTTTGTTGGTGTAATGTGTTAAATCTACCTCCTGCACCT
GAAGAGAAGTTGCTTACTGAGACTCGATCTAGGAATGCTTTTGTTGGTGTAATGTGTTAAATCTACCTCCTGCACCTGAA
GAGAAGTTGCTTACTGAGACTCGGATCAGATTTTATTTTCCTGAAAGAAAGGTTATTCGCAATGATATGAAGTTCAATTT
ACACCTTGACTTTGGGTAGTTCTTTCTAAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7072.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis