Browse Element(s) Details


OsAffx.28812.1.S1_at

Description tigr:9635.m03838
TID=OsAffx.28812.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=40s ribosomal protein s13. (maize
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g385502/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g38500NANA7+23131297..23137267retrotransposon protein, putative, unclassified
LOC_Os07g38510NANA7+23137587..23140611retrotransposon protein, putative, unclassified
LOC_Os07g38520Os.47130.4.A1_x_at3/117+23141813..23142136retrotransposon protein, putative, unclassified
LOC_Os07g38530Os.2221.1.S1_a_at11/117+23144311..23147915Protein kinase domain containing protein, expressed
LOC_Os07g38540Os.7072.1.S1_at11/117+23151490..2315239940S ribosomal protein S13, putative, expressed
LOC_Os07g38550Os.5063.1.S1_at11/117+23153429..23155647expressed protein
LOC_Os07g38550OsAffx.28812.1.S1_at2/117+23153429..23155647expressed protein
LOC_Os07g38560Os.23379.1.A1_at11/117+23158710..23162843Adenylyl-sulfate kinase, chloroplast precursor, putative, expressed
LOC_Os07g38570OsAffx.28813.1.S1_at11/117+23164052..23164770expressed protein
LOC_Os07g38580Os.25013.1.S1_x_at11/117+23168069..23171991zinc finger family protein, putative, expressed
LOC_Os07g38590Os.26705.1.S2_at11/117+23176530..23181113Carboxyl-terminal peptidase, putative, expressed
LOC_Os07g38590Os.26705.1.S1_at11/117+23176530..23181113Carboxyl-terminal peptidase, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28812.1.S1_at--70--4171Chr07:23151982..23152427 (25 bp)
CGCCTTCTTCAAGTTGTCGAAATGC
NONE
OsAffx.28812.1.S1_at--469--3651Chr07:23151988..23152433 (25 bp)
CTTCAAGTTGTCGAAATGCAGTACT
NONE
OsAffx.28812.1.S1_at--786--3011Chr07:23152423..23152447 (25 bp)
AATGCAGTACTTTTTTCATGTTGTC
NONE
OsAffx.28812.1.S1_at--377--10371Chr07:23152779..23152803 (25 bp)
TTTTTTCTAGCTACCATGTGCTGGT
NONE
OsAffx.28812.1.S1_at--278--1731Chr07:23152791..23152811 (21 bp)
ACCATGTGCTGGTATCAGGGTATTG
NONE
OsAffx.28812.1.S1_at--262--9631Chr07:23152805..23153171 (25 bp)
TCAGGGTATTGAGCTTTGGACATCT
NONE
OsAffx.28812.1.S1_at--881--5911Chr07:23153157..23153181 (25 bp)
GAGCTTTGGACATCTGTTTTGATTA
NONE
OsAffx.28812.1.S1_at--567--6531NONE
GATTTAAGATCTCCATATCGTACCT
NONE
OsAffx.28812.1.S1_at--59--9791NONE
TAAGATCTCCATATCGTACCTACTT
NONE
OsAffx.28812.1.S1_at--395--5191Chr07:23153941..23154071 (25 bp)
GCAATGCATTTCTTTACCTGCCATG
LOC_Os07g38550
OsAffx.28812.1.S1_at--174--3211Chr07:23154484..23154555 (25 bp)
CAAGGCATATGCAACACAGATCTGA
LOC_Os07g38550
Target Sequence 
CGCCTTCTTCAAGTTGTCGAAATGCAGTACTTTTTTCATGTTGTCAGGGGTACGAGATTATATAATATTTCTTTTTTTTC
TAGCTACCATGTGCTGGTATCAGGGTATTGAGCTTTGGACATCTGTTTTGATTAGATTTAAGATCTCCATATCGTACCTA
CTTGCTCTGTTTGTTTGTTTGTTTTTTGGTTATATTTCTAGGCAATGCATTTCTTTACCTGCCATGGTGAAAGATTTGTT
GACTCAGTTTGATAGGTCGTTTTACTATATTACTGTCATTGTGATCGTGCTCGGTTGTTGCCTTGTTGGATTGAGATGCC
ATCAAGGCATATGCAACACAGATCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28812.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis