Browse Element(s) Details


Os.26705.1.S1_at

Description gb:AK121705.1
DB_XREF= gi:37991328
TID=Os.26705.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.26705 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033106A21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033075B20, full insert sequence.
FL= gb:AK121705.1 gb:AK102732.1 gb:AK065116.1 gb:AK119637.1 gb:AK061739.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3859011/11Carboxyl-terminal peptidase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g38540Os.7072.1.S1_at11/117+23151490..2315239940S ribosomal protein S13, putative, expressed
LOC_Os07g38550Os.5063.1.S1_at11/117+23153429..23155647expressed protein
LOC_Os07g38550OsAffx.28812.1.S1_at2/117+23153429..23155647expressed protein
LOC_Os07g38560Os.23379.1.A1_at11/117+23158710..23162843Adenylyl-sulfate kinase, chloroplast precursor, putative, expressed
LOC_Os07g38570OsAffx.28813.1.S1_at11/117+23164052..23164770expressed protein
LOC_Os07g38580Os.25013.1.S1_x_at11/117+23168069..23171991zinc finger family protein, putative, expressed
LOC_Os07g38590Os.26705.1.S2_at11/117+23176530..23181113Carboxyl-terminal peptidase, putative, expressed
LOC_Os07g38590Os.26705.1.S1_at11/117+23176530..23181113Carboxyl-terminal peptidase, putative, expressed
LOC_Os07g38600Os.14815.1.S1_at10/117+23183619..23185231expressed protein
LOC_Os07g38610Os.7666.1.S1_at11/117+23185600..23190650UDP-galactose transporter family protein, expressed
LOC_Os07g38620Os.5497.3.S1_x_at11/117+23192535..23198087root border cell-specific protein, putative, expressed
LOC_Os07g38620Os.5497.1.S1_a_at10/117+23192535..23198087root border cell-specific protein, putative, expressed
LOC_Os07g38630OsAffx.5568.1.S1_at11/117+23201132..23201618hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26705.1.S1_at--152--7951Chr07:23179888..23179912 (25 bp)
GGATTTGGCAAGTCCAGCTACTTCA
LOC_Os07g38590
Os.26705.1.S1_at--398--8591Chr07:23179959..23179983 (25 bp)
TGGTATTGGGTCATTCACTGAGCAA
LOC_Os07g38590
Os.26705.1.S1_at--873--8151Chr07:23180084..23180108 (25 bp)
GGAAAAATTCTATCCATGCCCCTAA
LOC_Os07g38590
Os.26705.1.S1_at--939--2371Chr07:23180110..23180134 (25 bp)
AAACCCTTGACACCTCTGTATTATG
LOC_Os07g38590
Os.26705.1.S1_at--446--10031Chr07:23180143..23180167 (25 bp)
TAGTTTACACCTCTTCTCTTTTTCT
LOC_Os07g38590
Os.26705.1.S1_at--156--9671Chr07:23180190..23180214 (25 bp)
TCACCATTTTCCCACCAGGTTATTA
LOC_Os07g38590
Os.26705.1.S1_at--664--7351Chr07:23180238..23180262 (25 bp)
GTGAAATTTGTTCTCTTCCTCAGAG
LOC_Os07g38590
Os.26705.1.S1_at--867--9251Chr07:23180254..23180278 (25 bp)
TCCTCAGAGATGTTGGTCTGGCTCT
LOC_Os07g38590
Os.26705.1.S1_at--772--5111Chr07:23180338..23180362 (25 bp)
GCACTTGTGCCTCATGTTTTGTCAA
LOC_Os07g38590
Os.26705.1.S1_at--829--4331Chr07:23180380..23180404 (25 bp)
CCATGCATGCCTTCAACTTGATTGT
LOC_Os07g38590
Os.26705.1.S1_at--887--1671Chr07:23180408..23180432 (25 bp)
AGCCTTGGAGGTACTGCACTTGTTA
LOC_Os07g38590
Target Sequence 
GGATTTGGCAAGTCCAGCTACTTCAAGAACATACAAGTGGTGGATTCATCAAACAATCTTAGGGCACCAAGTGGTATTGG
GTCATTCACTGAGCAATCCAACTGCTATGATGTGCAGAATGGCAACAATGGTGACTGGGGCACATACTTCTACTATGGAG
GGCCAGGGAAAAACCCAAACTGTCCATAGTAGAAATGGAAAAATTCTATCCATGCCCCTAACAAACCCTTGACACCTCTG
TATTATGCAGTAAATTAGTTTACACCTCTTCTCTTTTTCTCCTCTTGGTTTTTGTTTTGGTTTCACCATTTTCCCACCAG
GTTATTAACTTCTAGGTAAGTGTTTGACATGTGAAATTTGTTCTCTTCCTCAGAGATGTTGGTCTGGCTCTTGGGAGGAG
TGCGGTCAAGTTTCTGAAGAGAAACAGGCCTGTTTGGTTGGTTGGTTTGTGCACTTGTGCCTCATGTTTTGTCAAATATT
TTTTGTTTTCTCCCATGCATGCCTTCAACTTGATTGTTGGAGCCTTGGAGGTACTGCACTTGTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26705.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis